| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,149,089 – 10,149,141 |
| Length | 52 |
| Max. P | 0.991946 |
| Location | 10,149,089 – 10,149,141 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 94.03 |
| Shannon entropy | 0.09540 |
| G+C content | 0.32230 |
| Mean single sequence MFE | -12.33 |
| Consensus MFE | -11.52 |
| Energy contribution | -11.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.991946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10149089 52 - 27905053 AUAAGCACAGUGUUUU-UUUAGUUAUCUGCAACAUAACAGAUGAUUAUAGCCG .........(.(((..-..((((((((((........)))))))))).)))). ( -10.00, z-score = -2.13, R) >droSim1.chr3R 16210163 53 + 27517382 UUAAGCACACUGGUUUAUUUAGUUAUCUGCAACAUAACAGAUGAUUAUAGCCU ...........((((....((((((((((........)))))))))).)))). ( -13.10, z-score = -3.07, R) >droSec1.super_0 9229632 53 + 21120651 UUAAGCACACUGGUUUAUUUAGUUAUCUGCAACAUAACAGAUGAUUAUAGCCU ...........((((....((((((((((........)))))))))).)))). ( -13.10, z-score = -3.07, R) >droEre2.scaffold_4770 9682449 53 - 17746568 UUAAGCACAGUGGUUUAAUUAGUUAUCUGCAACAUAACAGAUGAUUAUAGCCU ...........((((....((((((((((........)))))))))).)))). ( -13.10, z-score = -2.79, R) >consensus UUAAGCACACUGGUUUAUUUAGUUAUCUGCAACAUAACAGAUGAUUAUAGCCU ...........((((....((((((((((........)))))))))).)))). (-11.52 = -11.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:40 2011