| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,124,914 – 10,125,017 |
| Length | 103 |
| Max. P | 0.637916 |
| Location | 10,124,914 – 10,125,017 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 98.08 |
| Shannon entropy | 0.02649 |
| G+C content | 0.43089 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -25.60 |
| Energy contribution | -25.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10124914 103 + 27905053 UGCAUAUUUAAUGGUCGUAUUGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUCU-AGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAU .((((.........((((.(((((((..(((((....)))))(((((.((....)).)))))...-.)))))))...))))))))................... ( -25.60, z-score = -0.96, R) >droSim1.chr3R 16186439 104 - 27517382 UGCAUAUUUAAUGGUCGUAUUGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUGCCUCCCUUUAUUAU ........((((((..(..(((((((..(((((....)))))(((((.((....)).))))).....)))))))..)..(((.((....)).)))..)))))). ( -29.00, z-score = -1.75, R) >droSec1.super_0 9205495 104 - 21120651 UGCAUAUUUAAUGGUCGUAUUGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAU .((((.........((((.(((((((..(((((....)))))(((((.((....)).))))).....)))))))...))))))))................... ( -25.60, z-score = -1.06, R) >consensus UGCAUAUUUAAUGGUCGUAUUGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAU .((((.........((((.(((((((..(((((....)))))(((((.((....)).))))).....)))))))...))))))))................... (-25.60 = -25.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:40 2011