| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,123,839 – 10,123,959 |
| Length | 120 |
| Max. P | 0.785419 |
| Location | 10,123,839 – 10,123,959 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Shannon entropy | 0.38442 |
| G+C content | 0.45392 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -19.48 |
| Energy contribution | -21.85 |
| Covariance contribution | 2.37 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10123839 120 + 27905053 AGUUGAUAAUUUUAAAUUUCCCGCCAAGCUAAGACAAUCUGGCAACGCGUAAUGAAGGUGAAAGUGUUCCCAUUGGCUUAGUCAAUGGGAACAGGAGCUCACAUCGCAUUGAGAGCAAUU ..................(((((((..((((........))))..((.....))..))))....(((((((((((((...))))))))))))))))((((.((......)).)))).... ( -35.70, z-score = -2.42, R) >droSim1.chr3R 16185351 120 - 27517382 AGUUGAUAAUUUCAAACUUCCCGCCAAGCCAAGACAAUCUGGCAACGCGCAAUGAAGGUGAAAGUGUUCCCAUUGGCUUUGUCAAUGGGAACAGGAACUCACAUCCCAUUAAGAGCACUU .(((..((((......((((.(((...((((........))))...)))....))))((((...(((((((((((((...))))))))))))).....)))).....))))..))).... ( -35.30, z-score = -2.23, R) >droSec1.super_0 9204409 118 - 21120651 AGUUGAUUAUUUCAAAUUUCCCGCCAAGCUAAGACAAUCUGGCAACGCG--GUGAAGGUGAAAGUGUUCCCAUUGGCUUUGUCAAUGGGAACAGGAACUCACAUCCCAUUAAGAGCACUU .(((.....(((((..((..((((...((((........))))...)))--)..))..))))).(((((((((((((...)))))))))))))(((.......))).......))).... ( -37.80, z-score = -2.79, R) >droEre2.scaffold_4770 9656697 90 + 17746568 AGUUGAUAGUUUCAAAUGUGCCGCCAAGAUAAGACGGUCUGGCAACGCGAAAUGAAGGUGACAGUGUUCCCGUUGGCUUUGUCCCUCACG------------------------------ ..((((.....)))).((((..((((.(((......)))))))..))))...(((.((.(((((.(((......))).))))))))))..------------------------------ ( -21.60, z-score = 0.28, R) >consensus AGUUGAUAAUUUCAAAUUUCCCGCCAAGCUAAGACAAUCUGGCAACGCG_AAUGAAGGUGAAAGUGUUCCCAUUGGCUUUGUCAAUGGGAACAGGAACUCACAUCCCAUUAAGAGCACUU ..((((.....))))..((((((((..((((........))))..((.....))..))))....(((((((((((((...)))))))))))))))))....................... (-19.48 = -21.85 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:39 2011