| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,120,754 – 10,120,831 |
| Length | 77 |
| Max. P | 0.608604 |
| Location | 10,120,754 – 10,120,831 |
|---|---|
| Length | 77 |
| Sequences | 5 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 66.37 |
| Shannon entropy | 0.56261 |
| G+C content | 0.37826 |
| Mean single sequence MFE | -11.94 |
| Consensus MFE | -3.72 |
| Energy contribution | -4.04 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10120754 77 + 27905053 -AACUCACUAAUCAACUAAGGAAUUCUAGUGAACACAAAAA-----AUCACCAGAUAGCUAAUAUUCCCCAAUAGUUACGAGA -..(((..................(((.((((.........-----.)))).)))((((((...........)))))).))). ( -9.50, z-score = -1.43, R) >droEre2.scaffold_4770 9653757 82 + 17746568 -AACUGAUUAAUCAAUUAAGCAGUUCUCAUGAACACAAAAAUCACCAAAAGCUGGUGGCUGAUAUUCCACAACUGCAACAAUG -..................((((((.....(((......(..(((((.....)))))..)....)))...))))))....... ( -13.50, z-score = -0.98, R) >droYak2.chr3R 12505505 71 - 28832112 -GCCCAUCCACUCGAUUAAAGAGUUCUCAAGAACA-----------AAAAGCUUAUAGCUAAUAUACCCCAACAGCUACGAGG -.........((((........((((....)))).-----------.........(((((.............))))))))). ( -11.92, z-score = -2.65, R) >droSec1.super_0 9201351 74 - 21120651 AACUCGCUUAUUUCACU---GAGUUCUAGUGAACACACAAA------UCCCCACAUAGCUAAUAUUCCCCAAUAGUUACGAGA ..((((.....((((((---(.....)))))))........------........((((((...........)))))))))). ( -12.40, z-score = -2.89, R) >droSim1.chr3R 16182536 75 - 27517382 AACUCGCUUAUUUCACU---GAGUUCUAGUGAACACAAAAA-----AUCCCCAGAUAGCUAAUAUUCCCCAAUAGUUACGAGA ..((((.....((((((---(.....)))))))........-----.........((((((...........)))))))))). ( -12.40, z-score = -2.43, R) >consensus _ACCCGAUUAAUCAACUAA_GAGUUCUAGUGAACACAAAAA_____AUCACCAGAUAGCUAAUAUUCCCCAAUAGUUACGAGA ......................((((....)))).....................((((((...........))))))..... ( -3.72 = -4.04 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:38 2011