| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,109,165 – 10,109,255 |
| Length | 90 |
| Max. P | 0.741306 |
| Location | 10,109,165 – 10,109,255 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 64.40 |
| Shannon entropy | 0.72136 |
| G+C content | 0.47283 |
| Mean single sequence MFE | -17.06 |
| Consensus MFE | -7.32 |
| Energy contribution | -7.42 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10109165 90 + 27905053 GCACAAGACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG-----CACACGAGAGCAGACAGAGAUGGCAA--AUGAGUGGGAGGGAGAAG----- .(((...((((((.....))))))................(((..(-----(........)).)))...........--....)))...........----- ( -13.70, z-score = -0.39, R) >droAna3.scaffold_12911 2830596 87 - 5364042 GCACAAAACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG-----CACGCGAGAGCGGAGAGAGAGAGGGA--GUGAUUGCGCGGCGG-------- ((.(((.((((((.....))))))..)))....(((....)))..(-----(.(((....)))..........(.((--....)).))).))..-------- ( -19.90, z-score = -0.71, R) >droEre2.scaffold_4770 9642495 73 + 17746568 GCACAAGACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAGACAGUGAUGACAGAGGAGUGGGAGGGA----------------------------- .(((...((((((.....))))))................((((.........))))......))).......----------------------------- ( -12.80, z-score = -1.42, R) >droSec1.super_0 9189837 90 - 21120651 GCACAAGACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG-----CACACGAGAGCAGACAGAGAUGGGAA--AUGAGUGGGAGGGAGAAG----- .(((...((((((.....))))))................(((..(-----(........)).)))...........--....)))...........----- ( -13.70, z-score = -0.94, R) >droSim1.chr3R 16170798 90 - 27517382 GCACAAGACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG-----CACACGAGAGCAGACAGAGAUGGCAA--AUGAGUGGGAGGGAGAAG----- .(((...((((((.....))))))................(((..(-----(........)).)))...........--....)))...........----- ( -13.70, z-score = -0.39, R) >droVir3.scaffold_13047 18167010 68 + 19223366 -----AAACUUGCAAAUUGCGAGUAAUUGAGCAGAUUAAAGUCAAG----CAGCGACA--GCAACAG--------------------AG-GAGGGAGCAG-- -----..((((((.....))))))......((.(((....)))...----..((....--)).....--------------------..-......))..-- ( -12.30, z-score = -0.49, R) >droGri2.scaffold_14846 189664 85 + 266023 GUACACAACUUGCAAAUUGCGAGUAAUUGAGCAGAUUAAAGUCAAG----CAGCGACA--GCGACAGCAA--------CAGCAACUGAG-GAGGGAGCAG-- ((.((..((((((.....))))))...)).))........(((...----....))).--((..(..(..--------(((...)))..-)..)..))..-- ( -16.40, z-score = 0.12, R) >droWil1.scaffold_181089 10963180 98 + 12369635 GUACCCGAGUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG----CAAGCACAAAGCAGUAACAAAGGGAGGGUGGCAGCCAAGAGAGGGAGCGGAG ((.(((..(((((...((((...(((((.....))))).......)----)))((.....)).)))))........(((....)))......))).)).... ( -20.50, z-score = -1.22, R) >dp4.chr2 17493841 95 - 30794189 UCAUACAACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG-CAGC-AUGCCAGAGGAG-GGCAGACAGCAG--GGCAGCGCAAGAAACCCGAGG-- (((....((((((.....))))))...)))...(((....)))..(-(.(.-.((((.......-))))..).)).(--((...(....)...)))....-- ( -23.80, z-score = -1.74, R) >droPer1.super_0 7150652 95 + 11822988 UCAUACAACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG-CAGC-AUGCCAGAGGAG-GGCAGACAGCAG--GGCAGCGCAAGAAACCCGAGG-- (((....((((((.....))))))...)))...(((....)))..(-(.(.-.((((.......-))))..).)).(--((...(....)...)))....-- ( -23.80, z-score = -1.74, R) >consensus GCACAAAACUUGCAAAUUGCGAGUAAUUGAGAAGAUUAAAGUCAAG____CCACGCCAGAGCAGAGAGAGAGAGCAA__AGCAGCGGAAGGAAGAAG_____ .......((((((.....)))))).........(((....)))........................................................... ( -7.32 = -7.42 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:36 2011