| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,102,270 – 10,102,395 |
| Length | 125 |
| Max. P | 0.545457 |
| Location | 10,102,270 – 10,102,395 |
|---|---|
| Length | 125 |
| Sequences | 6 |
| Columns | 140 |
| Reading direction | forward |
| Mean pairwise identity | 75.49 |
| Shannon entropy | 0.43992 |
| G+C content | 0.57617 |
| Mean single sequence MFE | -51.98 |
| Consensus MFE | -28.32 |
| Energy contribution | -28.78 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10102270 125 + 27905053 ACCUUGGGAGGAUCCUCCGGGGGAAACCAGGGCACAGGCCAAUCCAGUUGAUGUGGCCGGUGUCGCCA--CGAACAGUGCUUUGAGACA-----UGCGCCUGAAAGGCCAG-AGGUUGUUGCUUCACUAGUUG------- .((((.((((....)))).))))....((((((((.((((((((.....))).)))))((.....)).--......)))))))).(((.-----((.(((.....)))))(-((((....)))))....))).------- ( -48.00, z-score = -0.83, R) >droSim1.chr3R 16163882 125 - 27517382 ACCUUGCGACGAUCCUCCGGGGGAAACCAGGGCACAGGCCAAUCCAGUUGAUGUGGCCGGUGUCGCCA--CGAAUAGUGCUUUAAGGCA-----UGCGCUGGAAAGGCCAG-AGGUUGUUGCUUCACUAGGUG------- ((((.(((((((.((((.((((....))..(((((.((((((((.....))).))))).))))).(((--((....(((((....))))-----).)).))).....)).)-))))))))))......)))).------- ( -52.40, z-score = -2.08, R) >droSec1.super_0 9182911 125 - 21120651 ACCUUGCGACGAUCCUCCGGGGGAAACCAGGGCACAGGCCAAUCCAGUUGAUGUGGCCGGUGUCGCCA--CGAAUAGUGCUUUAAGGCA-----UGCGCUGGAAAGGCCAG-AGGUUGUUGCUUCACUAGGUG------- ((((.(((((((.((((.((((....))..(((((.((((((((.....))).))))).))))).(((--((....(((((....))))-----).)).))).....)).)-))))))))))......)))).------- ( -52.40, z-score = -2.08, R) >droYak2.chr3R 12486637 125 - 28832112 ACCUUGCGAGGAUCCUCCUGGGGAAACCAGGGCACAGGCCAGUCCAGUUGAUGUGGCCGGUGUCGCCA--CGAAUAGUGCUUUAAGGCA-----UGAACUGGAAAGGCCAG-AGGUUGUUGCUUCACAGGUUG------- ((((.((((.(((((((((((.....))))).....((((..(((((((..((((((.......))))--))....(((((....))))-----).)))))))..))))))-.)))).)))).....))))..------- ( -52.40, z-score = -2.32, R) >droEre2.scaffold_4770 9635534 125 + 17746568 ACCUUGCGAGGAUCCUCCUGGGGAAACCAGGGCACAGGCCAAUCCAGUUGAUGUGGCCGGUGUCGCCA--CGAAUAGUGCUUUAAGGCA-----UGCACUGGAAAGGCCAG-AGGUUGUUGCUUCACAGGUUG------- ((((.((((.(((((((((((.....))))).....((((..((((((...((((((.......))))--))....(((((....))))-----)..))))))..))))))-.)))).)))).....))))..------- ( -49.60, z-score = -1.50, R) >droGri2.scaffold_15252 7743861 133 - 17193109 -------AGCGUGGGUGCAGGUGUUGCUACAGCAGCCGCUGCUGCGGAUGCCAUUGCUUGCGUUGGCGAUUGACUGAUGCCGUAGCGCAGUGGCUGCGCAUGAUAGCCAGGCAGACAGCUGGGCCACUGUUGGAACGUUG -------(((((.(((.(((.(((((((...((((((((((((((((.(((((.((....)).)))))(((....))).)))))..)))))))))))((......))..)))).))).))).))).........))))). ( -57.10, z-score = 0.11, R) >consensus ACCUUGCGACGAUCCUCCGGGGGAAACCAGGGCACAGGCCAAUCCAGUUGAUGUGGCCGGUGUCGCCA__CGAAUAGUGCUUUAAGGCA_____UGCGCUGGAAAGGCCAG_AGGUUGUUGCUUCACUAGUUG_______ .......((((.((((....))))((((..(((((.((((((((.....))).))))).)))))(((.......((((((...............))))))....))).....))))....))))............... (-28.32 = -28.78 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:35 2011