| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,086,120 – 10,086,172 |
| Length | 52 |
| Max. P | 0.706663 |
| Location | 10,086,120 – 10,086,172 |
|---|---|
| Length | 52 |
| Sequences | 8 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 80.29 |
| Shannon entropy | 0.42292 |
| G+C content | 0.62500 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -16.69 |
| Energy contribution | -16.23 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.706663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10086120 52 - 27905053 AGCAGGCGGCCUACAAAGCGGCCUGUGCUGCAGUGGAGGCCAAGCAGAAGGC .((..(((((((.((..(((((....)))))..)).)))))..)).....)) ( -20.50, z-score = -0.32, R) >droSim1.chr3R 16152100 52 + 27517382 AGCAGGCGGCCUACAAAGCGGCCUGUGCUGCAGUGGAGGCCAAGCAGAAAGC .....(((((((.((..(((((....)))))..)).)))))..))....... ( -20.10, z-score = -0.45, R) >droSec1.super_0 9166587 52 + 21120651 AGCAGGCGGCCUACAAAGCGGCCUGUGCUGCAGUGGAGGCCAAGCAGAAGGC .((..(((((((.((..(((((....)))))..)).)))))..)).....)) ( -20.50, z-score = -0.32, R) >droYak2.chr3R 12470328 52 + 28832112 AGCAGGCGGCCUACAAGGCGGCCUGUGCUGCAGUGGAGGCCAAGCAGAAGGC .((((((.(((.....))).)))))).((((..(((...))).))))..... ( -24.30, z-score = -1.44, R) >droEre2.scaffold_4770 9619145 52 - 17746568 AGCAGGCGGCCUACAAGGCGGCCUGUGCUGCAGUGGAGGCCAAGCAGAAGGC .((((((.(((.....))).)))))).((((..(((...))).))))..... ( -24.30, z-score = -1.44, R) >droWil1.scaffold_181089 10941968 52 - 12369635 AAACGGCUGCCUAUAAAGCAGCUUGUGCUGCAGUGGAGGCCAAGCAAAAGGC .....(((((((.((..(((((....)))))..)).))))..)))....... ( -18.60, z-score = -0.95, R) >droGri2.scaffold_15074 5746837 52 - 7742996 AAAAGUCCGCCUAUAAAGCAGUCUGUGCGGCUGCAGAGGCCUGCAAGAAGGC ........((((.....(((((((.(((....))).))).))))....)))) ( -16.80, z-score = -0.82, R) >apiMel3.GroupUn 75928989 52 - 399230636 AAGUGGCUGCAGAAAAAGCUGCGAGUGCAGCCGCGGCUGCGCAGAACAACGC ..(..(((........)))..)..(((((((....))))))).......... ( -21.70, z-score = -1.17, R) >consensus AGCAGGCGGCCUACAAAGCGGCCUGUGCUGCAGUGGAGGCCAAGCAGAAGGC .......(((((.((..(((((....)))))..)).)))))........... (-16.69 = -16.23 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:32 2011