| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,402,268 – 7,402,368 |
| Length | 100 |
| Max. P | 0.889138 |
| Location | 7,402,268 – 7,402,368 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 95.33 |
| Shannon entropy | 0.07868 |
| G+C content | 0.47500 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -23.73 |
| Energy contribution | -24.47 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7402268 100 - 23011544 CAGUGACUCUAAAAAUAGGCACAGCAUGGACGCGACACGCGAAAUCUAUGGAAAUUGGAGUGGGAAAAUGUGGGGGAAAUCUUGCAGUGCCUAUGGGGUU ....((((((....((((((((..((((((((((...))))...))))))..................((..(((....)))..)))))))))))))))) ( -31.60, z-score = -3.48, R) >droYak2.chr2L 16824028 100 + 22324452 CAGUGACUCUAAAAAUAGGCACAGCAUGGACGCGACACGCGAAAUCUGUGGAAAUGGGAGUGGGAAAAUGGGGGGAAAAUCUCGCAGUCUCUAUGGGGUU ....(((((((........(((((.((...((((...))))..)))))))...........((((...((.(((......))).)).))))..))))))) ( -24.70, z-score = -1.03, R) >droSec1.super_3 2917791 100 - 7220098 CAGUGACUCUAAAAAUAGGCACAGCAUGGAAGCGACACGCGAAAUCUAUGGAAAUUGGAGUGGGAAAAUGUGGGGGAAAUCUUGCAGUAUCUAUGGGGUU ....((((((....((((..((..((((((.(((...)))....))))))..................((..(((....)))..))))..)))))))))) ( -21.80, z-score = -1.10, R) >droSim1.chr2L 7191407 100 - 22036055 CAGUGACUCUAAAAAUAGGCACAGCAUGGACGCGACACGCGAAAUCUAUGGAAAUUGGAGUGGGAAAAUGUGGGGGAAAUCUAGCAGUGUCUAUGGGGUU ....((((((....((((((((..((((((((((...))))...))))))..................(((.(((....))).))))))))))))))))) ( -25.80, z-score = -2.15, R) >consensus CAGUGACUCUAAAAAUAGGCACAGCAUGGACGCGACACGCGAAAUCUAUGGAAAUUGGAGUGGGAAAAUGUGGGGGAAAUCUUGCAGUGUCUAUGGGGUU ....((((((....((((((((..((((((((((...))))...))))))..................(((((((....))))))))))))))))))))) (-23.73 = -24.47 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:38 2011