| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,016,229 – 10,016,316 |
| Length | 87 |
| Max. P | 0.982285 |
| Location | 10,016,229 – 10,016,316 |
|---|---|
| Length | 87 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 64.55 |
| Shannon entropy | 0.67663 |
| G+C content | 0.49364 |
| Mean single sequence MFE | -14.54 |
| Consensus MFE | -8.58 |
| Energy contribution | -8.72 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10016229 87 - 27905053 CGAAAGUCAGCUCGGUAAACUUGAAACUAGUUUAUCAAGCC----------AUUCCCCAACCCAACAACACCCACUCCCCCCACCUUUUUCCGGCUG (....)...(((.((((((((.......)))))))).))).----------.............................................. ( -10.80, z-score = -1.00, R) >droSim1.chr3R 16099462 87 + 27517382 CGAAAGUCAGCUCGGUAAACUUGAAACUAGUUUAUCAAGCC----------AUCCCCCAACCCCAAAACACCCACUCCCUCCACCUUUUUCCGGCUG (....)...(((.((((((((.......)))))))).))).----------.............................................. ( -10.80, z-score = -1.01, R) >droSec1.super_0 9115705 86 + 21120651 CGAAAGUCAGCUCGGUAAACUUGAAACUAGUUUAUCAAGCC----------AUCCACCAACCCCAGAACACCCACU-CCCCCACCUUUUUCCGGCUG ....((((.(((.((((((((.......)))))))).))).----------..............((........)-)..............)))). ( -12.90, z-score = -1.39, R) >droYak2.chr3R 12416512 97 + 28832112 CGAAAGUCAGCUCGGUAAACUUGAAACUAGUUUAUCAAGCACACUCCCCAAGCCCCCAAUCUCCACAGCCACCACCUUCCCUACCUUUUUCGGGCUG (....)...(((.((((((((.......)))))))).)))..........(((((....................................))))). ( -17.32, z-score = -1.77, R) >droEre2.scaffold_4770 9560499 85 - 17746568 CGAAAGUCAGCUCGGUAAACUUGAAACUAGUUUAUCAAGCAC----------UCCCCCAACCCCACACCAGCCAC--UCCCCGGCUUUUUCCGGCUG ....((((.(((.((((((((.......)))))))).)))..----------.................((((..--.....))))......)))). ( -19.80, z-score = -2.70, R) >droAna3.scaffold_13340 3251311 75 + 23697760 CGAGAGUCAGCUCGGUAAACUUGAAACUAGUUUAUCAGGC-------------CCCACGAUCCCAGAC---------UUUUGGUCCACUUUCGGCUG (((((((..((..((((((((.......))))))))..))-------------............(((---------.....))).))))))).... ( -20.10, z-score = -1.25, R) >dp4.chr2 17420001 82 + 30794189 --------CCCCAUGAGAACUUGAAACAAGUUUAUCAGGCGUCU-------CCCUGCUGUUCUCAAAACUCUAUGUACAUGCUUCUAUAUUAGGCUG --------.....(((((((...(((....)))..((((.....-------.))))..)))))))...............((((.......)))).. ( -12.30, z-score = 0.17, R) >droPer1.super_0 7076465 78 - 11822988 --------CCCCAUGAGAACUUGAAACAAGUUUAUCAGGCGUCU-------CCCUGCUGUUCUCAAAACUCU----ACAUGCUUCUAUAUUAGGCUG --------.....(((((((...(((....)))..((((.....-------.))))..))))))).......----....((((.......)))).. ( -12.30, z-score = -0.22, R) >consensus CGAAAGUCAGCUCGGUAAACUUGAAACUAGUUUAUCAAGCC__________AUCCCCCAACCCCAAAACACCCACU_CCCCCACCUUUUUCCGGCUG .........(((.((((((((.......)))))))).)))......................................................... ( -8.58 = -8.72 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:30 2011