| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,015,066 – 10,015,170 |
| Length | 104 |
| Max. P | 0.650071 |
| Location | 10,015,066 – 10,015,170 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 95.00 |
| Shannon entropy | 0.08809 |
| G+C content | 0.45169 |
| Mean single sequence MFE | -14.06 |
| Consensus MFE | -11.81 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10015066 104 + 27905053 UCGAGCAUGAAGUUUUCUCCUCCUGUGAAAAAUCUAUCUGCUCGCCGUGCUUAAUUUCACUUUCAAUUCCUUCUAUCUAUCUGCAUUUCCUUACCCGCUCCCCC .((((((.((..(((((.........))))).....))))))))..((((................................)))).................. ( -11.35, z-score = -1.47, R) >droEre2.scaffold_4770 9559337 104 + 17746568 UCGAGCAUGAAGUUUUCUCCUCCUGUGAGAAAUCUAUCUGCUCGCCGUGCUUAAUUUCACUUUCAGUUCCAUCUAUCUAUCUGCAUUUCCCUACCCGCUGCCCC ..(((((.((((.(((((((....).)))))).)).)))))))((.(((..............(((..............)))............))).))... ( -17.81, z-score = -2.03, R) >droYak2.chr3R 12415327 100 - 28832112 UCGAGCAUGAAGUUUUCUCCUCCAGUGAGAAAUCUAUCUGCUCGCCGUGCUUAAUUUCACUUUCAAUUCCAUCUAUCUAUCUGCAUUUCCC--CCCGCCCCC-- .((((((.((((.(((((((....).)))))).)).))))))))..((((................................)))).....--.........-- ( -17.15, z-score = -2.79, R) >droSec1.super_0 9114490 104 - 21120651 UCGAGCAUGAAGUUUUCUCCUCCUGUGAAAAAUCUAUCUGCUCGCCGUGCUUAAUUUCACUUUCAAUUCCAUCUAUCUAUCUGCAUUUCCUUACCCGCUCCCCC .((((((.((..(((((.........))))).....))))))))..((((................................)))).................. ( -11.35, z-score = -1.35, R) >droSim1.chr3R 16098287 104 - 27517382 UCGAGCAUGAAGUUUUCUCUUCCUGUGAAAAAUCUAUCUGCUCGCCGUGCUUAAUUUCACUUUCAAUUCCAUCUAUCUAUCUGCAUUUCCUUACCCGCUCCCCC ..((((..((((......))))..((((((.........((.......))....))))))....................................)))).... ( -12.62, z-score = -1.77, R) >consensus UCGAGCAUGAAGUUUUCUCCUCCUGUGAAAAAUCUAUCUGCUCGCCGUGCUUAAUUUCACUUUCAAUUCCAUCUAUCUAUCUGCAUUUCCUUACCCGCUCCCCC .((((((.((..(((((.(.....).))))).....))))))))..((((................................)))).................. (-11.81 = -11.57 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:29 2011