| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,001,167 – 10,001,260 |
| Length | 93 |
| Max. P | 0.655457 |
| Location | 10,001,167 – 10,001,260 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 68.11 |
| Shannon entropy | 0.61726 |
| G+C content | 0.43065 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -12.17 |
| Energy contribution | -12.44 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10001167 93 + 27905053 -----------UCAACG-AAAGGCAAAGCUUCCGGGCAUUAUCUUAAUUAUGCAAAGCCGUAUCGAAAGAGUUAUGGCCACA-GUCUUAACCCAUAGGCGUAUGCC -----------......-...((((..((((..((((((..........))))...((((((((....))..))))))....-........))..))))...)))) ( -24.00, z-score = -1.57, R) >droSim1.chr3R 16089013 93 - 27517382 -----------ACAACG-AGAAGCAAAGCUCCGGGGCAUUAUCUUAAUUAUGCAAAGCCGUAUCGAAAGAGUUAUGGCCAAA-GUCUUAACCCAUGGGCGUAUGCC -----------......-....(((..((((.(((((((..........))))...((((((((....))..))))))....-.......)))..))))...))). ( -25.80, z-score = -1.52, R) >droSec1.super_0 9105234 93 - 21120651 -----------ACAACG-AGAAGCAAAGCUUCCGGGCAUUAUCUUAAUUAUGCAAAGCCGUAUCGAAAGAGUUAUGGCCAAA-GUCUUAACCCAUGGGCGUAUGCC -----------....((-.(((((...)))))))(((((.................((((((((....))..))))))....-((((........))))..))))) ( -25.10, z-score = -1.62, R) >droYak2.chr3R 12405957 103 - 28832112 ACAACGAGAAGGCAUCG-CAGAGAAAAGCUUCCGGGCAUUAUCUUAAUUAUGCAAAGCCGUAUCGAAAGAGUUAUGGCCUAA-AUCUUAACCCAUGGGCGUAUGC- ...........((((((-(.(.(((....))))((((((..........))))...((((((((....))..))))))....-........))....))).))))- ( -22.60, z-score = 0.21, R) >droEre2.scaffold_4770 9550035 104 + 17746568 ACAAGAAGAAGGCAUCGCAAAAGUAACGCUUUAGGGCACAAUCUUAAUUAUGCAAAGCCGUAUCGAAAGAGUUAUGGCCAAA-GUCUUAACCCAUGGGCGUGUGC- ........(((((.(..(....)..).)))))...(((((................((((((((....))..))))))....-((((........)))).)))))- ( -22.80, z-score = 0.09, R) >droAna3.scaffold_13340 3238006 106 - 23697760 AUAACGAGAAAGUCAAACAAAAGAAAUCCUUUCGGGCAUUAUCUUAAUUAUGCAAAGCCGAAUCGAAAGAGUUAUGGUGAGAUAUCUGAACCCUUGAAGGGAGAAC ..........................((((((((((((.((((((...........((((..((....))....))))))))))..))..)))..))))))).... ( -20.30, z-score = -0.49, R) >droWil1.scaffold_181089 10880266 81 + 12369635 ------------------GAGAGAAAGGCAUUCGUUC-UGUUUUUUUUUAUGC----CUUUUUCAAAUGAUGAUUGGCCAAA-GCGCAAGGAAAAGGACAAGAGA- ------------------..(((((((((((......-...........))))----))))))).........(((.((...-.(....).....)).)))....- ( -16.93, z-score = 0.07, R) >consensus ___________GCAACG_AAAAGAAAAGCUUCCGGGCAUUAUCUUAAUUAUGCAAAGCCGUAUCGAAAGAGUUAUGGCCAAA_GUCUUAACCCAUGGGCGUAUGCC ...........................((((..((((((..........))))...((((((((....))..)))))).............))..))))....... (-12.17 = -12.44 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:27 2011