| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,999,075 – 9,999,189 |
| Length | 114 |
| Max. P | 0.892369 |
| Location | 9,999,075 – 9,999,189 |
|---|---|
| Length | 114 |
| Sequences | 9 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.33 |
| Shannon entropy | 0.48670 |
| G+C content | 0.41777 |
| Mean single sequence MFE | -31.01 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.89 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9999075 114 + 27905053 -GAAAGUUGCUGGCCAA-CGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGCGUUGUCCGCUGUACAAUAUACGUUAAAUGUCAAGUU -....((((.....)))-)(((....((((((((((((....))))))))))))...)))...(((.(((((((.((((((.....))))))....))))))).....)))..... ( -38.60, z-score = -3.44, R) >droSim1.chr3R 16086920 114 - 27517382 -GAAAGUUGCUGGCCAA-CGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGCGUUGUCAGCUGUACAAUAUACGUUAAAUGUCAAGUU -....((.((((((.((-((((....((((((((((((....))))))))))))...)))...(.(((((....)))))))))))))))...))...................... ( -38.60, z-score = -3.41, R) >droSec1.super_0 9103149 114 - 21120651 -GAAAGUUGCUGGCCAA-CGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAACGUUGUCAGCUGUACAAUAUUCGUUAAAUGUCAAGUU -....((.((((((.((-((((....((((((((((((....))))))))))))...))).....(((((....))))).)))))))))...))...................... ( -38.60, z-score = -3.86, R) >droYak2.chr3R 12403815 114 - 28832112 -GAAAGUUGCUGGCCAA-CGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGCGCAGUCAGCUGCACUAUAGACAUUAAAUGUCAAGUU -...(((.((.(((...-.(((....((((((((((((....))))))))))))...)))...((((((((.......)))))))).))))))))...(((((...)))))..... ( -41.50, z-score = -3.92, R) >droEre2.scaffold_4770 9548001 108 + 17746568 -GAAAGUUGCUGGCCAA-CGACUUAGUGGCAGCUUUAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUACGUAUACGCUGCAUUGUAAGCUGUAUAAUAGACGUUAAAGUU------ -....((((.....)))-)(((((..(((((((((.((....)).)))))))))((((((...(....).((((((((........))).)))))...)))))).)))))------ ( -26.40, z-score = -0.40, R) >droAna3.scaffold_13340 3235821 114 - 23697760 -GAAAGUUACUGGCCAA-AGACUUAGCGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGUGCUGUCCAUGGUGCGUUAGAGGUUAAAUGUCAAGUU -...........((((.-.(((..((((((((((((((....)))))))))))...........((((((....))))))))))))..))))(((((........)))))...... ( -33.80, z-score = -1.65, R) >dp4.chr2 17408613 94 - 30794189 -GCCAGUUGCUGGCCAA-AGUCUUAGGGGCGGUUGAAAGUGCUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGAG--GUUAAAUGUCAAGUU------------------ -(((((...)))))...-(..(((...((((((((((.....))))).))))).............((((....)))))))--..)............------------------ ( -19.50, z-score = 1.14, R) >droPer1.super_0 7064698 94 + 11822988 -GCCAGUUGCUGGCCAA-AGUCUUAGGGGCGGUUGAAAGUGCUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGAG--GUUAAAUGUCAAGUU------------------ -(((((...)))))...-(..(((...((((((((((.....))))).))))).............((((....)))))))--..)............------------------ ( -19.50, z-score = 1.14, R) >droWil1.scaffold_181089 10878303 105 + 12369635 AAAACUUUGCUGGCAAGUCUUCUUAGAUGCGGCUUAAAGUGUUUAAAGUUGCCAAAUGUCAAAGAUUGCGCAUACGCAGUGGUGUCAAAAGU----CAGAAAUCAAAAU------- ....((((((((((((.(....((((((((........))))))))).))))))...).)))))((((((....))))))(((.((......----..)).))).....------- ( -22.60, z-score = -0.26, R) >consensus _GAAAGUUGCUGGCCAA_CGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGCGUUGUCAGCUGUACAAUAGACGUUAAAUGUCAAGUU ..........((((.............(((((((((((....)))))))))))............(((((....)))))....))))............................. (-17.42 = -17.89 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:26 2011