| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,994,946 – 9,995,004 |
| Length | 58 |
| Max. P | 0.557366 |
| Location | 9,994,946 – 9,995,004 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 93.21 |
| Shannon entropy | 0.12368 |
| G+C content | 0.50847 |
| Mean single sequence MFE | -14.92 |
| Consensus MFE | -14.20 |
| Energy contribution | -13.72 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9994946 58 + 27905053 UUAUCCUCACUCUAUUUUCC-AAGGAACCAGGAGCAAAGAGUUCCGGGAACAGGAUACU .((((((.........(((.-...)))((.(((((.....))))).))...)))))).. ( -15.70, z-score = -1.73, R) >droEre2.scaffold_4770 9544109 58 + 17746568 UUAUCCUCACUCACUUCCCC-GUGGAGCCAGGAGCAAAGAGUUCCGGGAACAGGACACU ...((((...((((......-))))..((.(((((.....))))).))...)))).... ( -14.50, z-score = -0.09, R) >droYak2.chr3R 12399619 59 - 28832112 UUAUCCUCACUCACUUCCCCCAAGGAACCAGGAGCAAAGAGUUCCGGGAACAGGACACU ...((((..(((..((((.....))))...(((((.....))))))))...)))).... ( -14.80, z-score = -0.86, R) >droSec1.super_0 9099049 59 - 21120651 UUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCCGGGAACAGGACACU ...((((..(((..((((.....))))...(((((.....))))))))...)))).... ( -14.80, z-score = -1.10, R) >droSim1.chr3R 16082772 59 - 27517382 UUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCCGGGAACAGGACACU ...((((..(((..((((.....))))...(((((.....))))))))...)))).... ( -14.80, z-score = -1.10, R) >consensus UUAUCCUCACUCACUUCCCC_AAGGAACCAGGAGCAAAGAGUUCCGGGAACAGGACACU ...((((..(((..((((.....))))...(((((.....))))))))...)))).... (-14.20 = -13.72 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:26 2011