| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,401,916 – 7,402,047 |
| Length | 131 |
| Max. P | 0.808711 |
| Location | 7,401,916 – 7,402,047 |
|---|---|
| Length | 131 |
| Sequences | 8 |
| Columns | 151 |
| Reading direction | reverse |
| Mean pairwise identity | 75.21 |
| Shannon entropy | 0.44780 |
| G+C content | 0.48852 |
| Mean single sequence MFE | -30.96 |
| Consensus MFE | -18.32 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7401916 131 - 23011544 GUCGAAGUGAAUCACGCUGUCUGGGAACCGC---------------AGCAUGCUCCAAAAGCAUGCUCAGACACACACCGAUACCGACCAAACCCAAAA--CAAAUC---CAGACCUGACCAGGCCAAACUGUUUACUCUCGAUAUUAGCA (((((((((((.......(((((((....(.---------------((((((((.....)))))))))..........((....)).............--....))---))))).....(((......))))))))).)))))....... ( -32.80, z-score = -2.67, R) >droPer1.super_5 5700801 115 + 6813705 --GCAAGUAAAUCUCGCAGUUGGUGUAUAG----------------AACAUGCCCCAAAUGCAUGCUCAGACGCAGACAGGCA---GCCAGACCGA---------------GGCCUAGACCUGGCCAAAUUGUUUACUAGCCGUACAAACA --((.(((((((.(((...(((((((...(----------------(.(((((.......))))).))..))((......)).---)))))..)))---------------((((.......)))).....))))))).)).......... ( -31.10, z-score = -0.87, R) >dp4.chr4_group1 4151174 115 - 5278887 --GCACGUAAAUCUCGCAGUCGGUGUAUAG----------------AACAUGCCCCAAAUGCAUGCUCAGACGCAGACUGGCA---GCCAGACGGA---------------GGCCUAGACCUGGCCAAAUUGUUUACUAGCCGUACAAACA --....(((........((((.((((...(----------------(.(((((.......))))).))..)))).))))((((---(..((((((.---------------((((.......))))...)))))).)).))).)))..... ( -32.30, z-score = -0.49, R) >droAna3.scaffold_12916 15310684 146 - 16180835 GCCAAAGUGAAUCACGCAGUCUGGUUACCCCAAGGCAUGCUUUGAAAGCAUGCUUCGAAAGCAUGCUCCAAUGUACAAAGCCACUAGCCAGACCCAAAA--CAAAUC---CAGACCUGACCAGGCCAAACUGUUUACUCACGAUAUCAAUA ......((((........(((((((((......(((.(((.(((..((((((((.....)))))))).))).)))....)))..)))))))))...(((--((....---..(.(((....)))).....)))))..)))).......... ( -36.30, z-score = -2.41, R) >droEre2.scaffold_4929 16319314 131 - 26641161 GCCAAAGUGAAUCACGCUGUCUGGGAAGCGC---------------AGCAUGCUCCAAAAGCAUGCUCAGACAAACACCGAUACCGUCCAAACCCAAAA--CAAAUA---GAGACCUGACCAGGCCAAACUGUUUACUCUCGAUAUUAGCA ......(((...)))((((..((((....(.---------------((((((((.....))))))))).(((.............)))....))))...--......---((((..(((.(((......))).))).)))).....)))). ( -29.82, z-score = -1.35, R) >droYak2.chr2L 16823725 136 + 22324452 GUCAAAGUGAAUCACGCUGUCUGGGAACCGC---------------AGCAUGCUCCAAAAGCAUGCUCAGACAAACACCGAUACCGGCCAAACCCAAAGCCCAAAACAAACAGACCUGACCAGGCCAAACUGUUUACUCUCGAUAUUAGCA ......((..(((..(((...((((....(.---------------((((((((.....))))))))).........(((....))).....)))).))).......((((((.(((....))).....))))))......)))....)). ( -31.00, z-score = -1.41, R) >droSec1.super_3 2917462 131 - 7220098 GUCAAAGUGAAUCACGCUGUCUGGGAACCGC---------------AGCAUGCUCCAAAAGCAUGCUCAGACAAACACCGAUACCAACCAAACCCAAAA--CAAAUC---CAGACCUGACCAGGCCAAACUGUUUACUCUCGAUAUUAGCA ((((.((((.....))))(((((((....(.---------------((((((((.....)))))))))...........(....)..............--....))---))))).))))(((......)))................... ( -27.20, z-score = -1.55, R) >droSim1.chr2L 7191084 131 - 22036055 GUCAAAGUGAAUCACGCUGUCUGGGAACCGC---------------AGCAUGCUCCAAAAGCAUGCUCAGACAAACACCGAUACCAACCAAACCCAAAA--CAAAUC---CAGACCUGACCAGGCCAAACUGUUUACUCUCGAUAUUAGCA ((((.((((.....))))(((((((....(.---------------((((((((.....)))))))))...........(....)..............--....))---))))).))))(((......)))................... ( -27.20, z-score = -1.55, R) >consensus GUCAAAGUGAAUCACGCUGUCUGGGAACCGC_______________AGCAUGCUCCAAAAGCAUGCUCAGACAAACACCGAUACCAGCCAAACCCAAAA__CAAAUC___CAGACCUGACCAGGCCAAACUGUUUACUCUCGAUAUUAGCA .....(((((((......((((((......................((((((((.....))))))))............(........)..............................))))))......)))))))............. (-18.32 = -18.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:37 2011