| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,959,320 – 9,959,415 |
| Length | 95 |
| Max. P | 0.909692 |
| Location | 9,959,320 – 9,959,415 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.91 |
| Shannon entropy | 0.39541 |
| G+C content | 0.44116 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -20.50 |
| Energy contribution | -21.25 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9959320 95 + 27905053 GAGCCCAUUCGCAUGCUCACCUGGAGUCGUGUGAAAGGUGAAAUAUAUACUUAUGUACGUACUUAUG----UUGGGCAGCUCAAUCUAUUGGGUGUUUG--------- ..((((((((((((((((.....))).))))))))(((((..(((((....)))))...)))))...----.))))).((((((....)))))).....--------- ( -30.70, z-score = -2.47, R) >droSim1.chr3R 16047456 101 - 27517382 GAGCCCAUUCGCAUGCUCAGCUGGAGUCGUGUGAAAGGUGAAACAUAUACUUAUGUACGUACUUAUG----UUGGGCAGCUCAAUCUAUUGGGUGUUUUUGUUUU--- ..((((((((((((((((.....))).))))))))(((((..(((((....)))))...)))))...----.))))).((((((....))))))...........--- ( -32.60, z-score = -2.65, R) >droSec1.super_0 9063673 104 - 21120651 GAGCCCAUUCGCAUGCUCAGCUGGAGUCGUGUGAAAGGUGAAAUAUAUACUUAUGUACGUACUUAUG----UUGGGCAGCUCAAUCUAUUGGGUGUUUUUUGUUUUUU ..((((((((((((((((.....))).))))))))(((((..(((((....)))))...)))))...----.))))).((((((....)))))).............. ( -30.70, z-score = -2.38, R) >droEre2.scaffold_4770 9508242 99 + 17746568 GAGCUCAUUCGCAUGCUCACCUGGAGUCGUGUGAAAGGUGGAAUAUAUACUGAUGUACUUAUGCUGGGCAGUUGGGCAGCUCAAUCUAUUGGGUGUUUG--------- ..((((((((((((((((.....))).)))))))).............((((..(((....)))....))))))))).((((((....)))))).....--------- ( -26.60, z-score = 0.16, R) >droYak2.chr3R 12362716 97 - 28832112 GAGCUCAUUCGCAUGCUCACCUGGAGUCGUGUGAAAGGUGGAAUAUAUACUUAUGUACUUAUG--------UUGGGCAGCUCAAUCUAUUGGGUGUUUGGUUUUG--- ..((((((((((((((((.....))).))))))))(((((..(((......))).)))))...--------.))))).((((((....))))))...........--- ( -25.80, z-score = -0.96, R) >droAna3.scaffold_13340 3190724 77 - 23697760 GAGCUCAUUCGCAUGCUUCGAUGGAACCGUGUGAAAGGUGAA-------------UACUUAUG--------CUGGGGAGCU--AUCUACCGGCUAUUUUU-------- ..(((..((((((((.(((....))).)))))))).)))...-------------.......(--------(((((((...--.))).))))).......-------- ( -20.90, z-score = -1.04, R) >consensus GAGCCCAUUCGCAUGCUCACCUGGAGUCGUGUGAAAGGUGAAAUAUAUACUUAUGUACGUACGUAUG____UUGGGCAGCUCAAUCUAUUGGGUGUUUGU________ ..((((((((((((((((.....))).))))))))..(((..(((((....)))))...)))..........))))).((((((....)))))).............. (-20.50 = -21.25 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:18 2011