| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,907,001 – 9,907,104 |
| Length | 103 |
| Max. P | 0.591623 |
| Location | 9,907,001 – 9,907,104 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.51 |
| Shannon entropy | 0.45191 |
| G+C content | 0.46786 |
| Mean single sequence MFE | -26.09 |
| Consensus MFE | -15.10 |
| Energy contribution | -14.91 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9907001 103 + 27905053 -----UCCACCUGUAUCGAUGCGAUAUGU--------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAAUAACGAGGCGCAGCCGAUAGACGAAUU -----....(.(.(((((.((((...(((--------((..........(((((((((..(((......)))....)))))))))....)))))...))))..))))).).).... ( -27.24, z-score = -1.25, R) >droGri2.scaffold_15074 3274628 88 + 7742996 ---------------GUCGUGCUGCCUGAG-------CAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGCGCUCAACAGUGAG------CAAAUUGACGAAUU ---------------((((((((..(((.(-------(((.......))))(((((((..(((......)))....)))))))......)))..))------))...))))..... ( -27.50, z-score = -1.97, R) >droMoj3.scaffold_6540 972613 88 - 34148556 ---------------GUGCUUCUGCUUGAA-------CAGAUAAUAACUGCGCCUCUACUUUGAUAGGGCAAUGCCUGGAGGCGCUGAACAGUGAA------CCCAUCGAAGAAUU ---------------((((.((((......-------))))........)))).....(((((((.(((....(((....)))(((....)))...------)))))))))).... ( -22.90, z-score = -1.07, R) >droVir3.scaffold_12822 3592197 90 - 4096053 -------------GUCUGUCGCUGCUUGAA-------CAGAUAAUAACUGCGCCUCUACUUUGAUAGGGCAAUGCCUGGAGGCGCUCAACAGCGAG------CAAAUUGACGAAUU -------------(((((((((((.((((.-------.((.......))(((((((((((.....))(((...)))))))))))))))))))))).------))....)))..... ( -30.60, z-score = -2.64, R) >droWil1.scaffold_181108 2064473 92 + 4707319 -----------------AUUCCCAUUUGCU-------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGUCUGGAGGUGCUUAACAAUGAGGCGCAACCAAUUGACGAAUU -----------------.............-------...........((((((((..((((((((......)))).))))((.....))...))))))))............... ( -19.60, z-score = -0.81, R) >dp4.chr2 17313000 98 - 30794189 ------------AUGUUGAUGUCAAAUGCCA------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAACAAUGAGGCGCAGCCGAUAGACGAAUU ------------.(((((.((((........------..))))....(((((((((....(((.((((......))))(((...)))..))).))))))))).)))))........ ( -25.80, z-score = -1.24, R) >droPer1.super_0 6968131 98 + 11822988 ------------AUGUUGAUGUCAAAUGCCA------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAACAAUGAGGCGCAGCCGAUAGACGAAUU ------------.(((((.((((........------..))))....(((((((((....(((.((((......))))(((...)))..))).))))))))).)))))........ ( -25.80, z-score = -1.24, R) >droAna3.scaffold_13340 3129381 116 - 23697760 UCCAACCUCCAAAUCUCGAUUCCCAAAAUCGAAAUUUUAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAAUAGCGAGGCUCAGCCAAUUGACGAAUU ..(((.....((((.((((((.....)))))).))))..........(((.(((((.(((((..((((......)))))))))(((....)))))))).)))....)))....... ( -24.90, z-score = -0.81, R) >droEre2.scaffold_4770 9447562 103 + 17746568 -----UCCACCUGCAUCGAUGCGAUAUGC--------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAACAACGAGGCGCAGCCGAUAGACGAAUU -----.........((((..((.....))--------..........(((((((((((((((..((((......)))))))))).........))))))))).))))......... ( -25.80, z-score = -0.53, R) >droYak2.chr3R 12307402 103 - 28832112 -----UGCACCUGUAUCGAUGCGAUAUGC--------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUGAACAACGAGGCGCAGCCGAUAGACGAAUU -----....(.(.(((((..((.....))--------..........(((((((((..(((....))).((..(((....)))..))......))))))))).))))).).).... ( -28.00, z-score = -1.44, R) >droSec1.super_0 9011409 103 - 21120651 -----UCCACCUGUAUCGAUGCGAUAUGC--------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAACAACGAGGCGCAGCCGAUAGACGAAUU -----....(.(.(((((..((.....))--------..........(((((((((((((((..((((......)))))))))).........))))))))).))))).).).... ( -27.50, z-score = -1.21, R) >droSim1.chr3R 15994810 103 - 27517382 -----UCCACCUGUAUCGAUGCGAUAUGC--------UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAACAACGAGGCGCAGCCGAUAGACGAAUU -----....(.(.(((((..((.....))--------..........(((((((((((((((..((((......)))))))))).........))))))))).))))).).).... ( -27.50, z-score = -1.21, R) >consensus ____________GUAUCGAUGCGAUAUGC________UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAACAACGAGGCGCAGCCGAUAGACGAAUU .................................................(((((((((..(((......)))....)))))))))............................... (-15.10 = -14.91 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:09 2011