| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,880,866 – 9,880,971 |
| Length | 105 |
| Max. P | 0.771062 |
| Location | 9,880,866 – 9,880,971 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 71.30 |
| Shannon entropy | 0.49520 |
| G+C content | 0.33623 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -9.62 |
| Energy contribution | -10.22 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9880866 105 - 27905053 AAAUGAGCAUGUAAAUAGCAUGUUAACUGGAGUAUCAAAUGAAUUGA--AGUUCUCAAGACUAAUUUAUGCGUU-UGAAUGAUCAGAUAAAAGUUAAAAUCACUCGAG .....(((((((.....)))))))..((.((((.(((((((...(((--(..((....))....))))..))))-))).......(((..........))))))).)) ( -18.90, z-score = -0.56, R) >droSim1.chr3R 15968755 95 + 27517382 AAAUGAGCAUGUAAAUAGCGUGUUAACUGGAGUAUCAAAUGAAUUGA--AGUUCUCCAGACUAAUUUAUGCGUU-UGAGUGAUCAGAUAAAAGUCGAG---------- .....(((((((.....)))))))..((((((..((((.....))))--....))))))............(((-(((....))))))..........---------- ( -22.00, z-score = -2.11, R) >droSec1.super_0 8986049 95 + 21120651 AAAUGAGCAUGUAAAUAGCGUGUUAACUGGAGUAUCAAAUGAAUUGA--AGUUCUCCAGACUAAUUUAUGCGUU-UGAGUGAUCAGAUAAAAGUCGAG---------- .....(((((((.....)))))))..((((((..((((.....))))--....))))))............(((-(((....))))))..........---------- ( -22.00, z-score = -2.11, R) >droYak2.chr3R 12280314 102 + 28832112 AAAUGAGCAUGUAAAUAACGUGUUAACCCGAGUAGCAAAUUAAUUGACUAAUUUAUGCAAUUGAGAUGGAUAUUAUAUACAAGUCUGCUAAGACCACUCGAG------ .....(((((((.....)))))))....(((((..((..(((((((.(........))))))))..))..............((((....)))).)))))..------ ( -21.00, z-score = -2.18, R) >droEre2.scaffold_4770 9421685 89 - 17746568 AAAUGAGCAUGUAAAUGGCGUGUUAACCGGAGUAUCAAAUUAAUUGA--AAUUCUCAAGAUUAAUUUAUGCGAU-UGAGUGAACCACUCGAG---------------- .....(((((((.....))))))).......((((.(((((((((((--.....)))..))))))))))))..(-((((((...))))))).---------------- ( -19.20, z-score = -1.69, R) >consensus AAAUGAGCAUGUAAAUAGCGUGUUAACUGGAGUAUCAAAUGAAUUGA__AGUUCUCAAGACUAAUUUAUGCGUU_UGAGUGAUCAGAUAAAAGUCAAG__________ .....(((((((.....)))))))..((((((..((((.....))))......))))))................................................. ( -9.62 = -10.22 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:08 2011