| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,388,284 – 7,388,381 |
| Length | 97 |
| Max. P | 0.999275 |
| Location | 7,388,284 – 7,388,381 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 61.44 |
| Shannon entropy | 0.73968 |
| G+C content | 0.42938 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -9.70 |
| Energy contribution | -11.60 |
| Covariance contribution | 1.90 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.76 |
| SVM RNA-class probability | 0.999275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7388284 97 - 23011544 UCGUUGAAUUCGCUUAGCGGUUAAAAUUAACCGUUUAGCAAAUACAUCGACCUGACUUAGC-ACAGACAAUAACCAUUCAUAGUGCAGACGACCACCG (((((......(((.((((((((....)))))))).)))....................((-((..................)))).)))))...... ( -21.77, z-score = -2.95, R) >droEre2.scaffold_4929 16304597 96 - 26641161 UGGUUGAAUUCGCUUUGCGGUUAACAUUAACCGCUUAGCGAAUACAUCGACCUGUCCGAGC-GCAGACAACAACCUUUCUUAGUACGGACGCAGCCG- .(((((((((((((..(((((((....)))))))..)))))))...)))))).(((((.((-..(((..........)))..)).))))).......- ( -37.40, z-score = -5.24, R) >droYak2.chr2L 16809403 86 + 22324452 UGUUGGAAUUCGCUUAGCGGUUAACAUUAACCGUUUAGCGCAUACAUUGACUUGCCUUAGC-AAAGACAACAACCGCGCAUGGUGCG----------- ((((((.((.((((.((((((((....)))))))).)))).)).)......((((....))-))...)))))..(((((...)))))----------- ( -25.90, z-score = -1.97, R) >droSec1.super_3 2903267 91 - 7220098 UGGUUGAAUUCGCUUAGCGG------UUAACUGUUUAGCAAAUAUAUCGACCUGACUUAGC-AUAGACAAUAACCGCAUAUAGCACAGACUUCCCCCG .((..(((.(((((..((((------(((..((((((((....................))-.)))))).)))))))....)))...)).)))..)). ( -19.85, z-score = -1.88, R) >droSim1.chr2L 7176760 97 - 22036055 UGGUUGAAUUCGCUUAGCGGUUAUUUUUAACCGUUUAGCAAAUACAUCGACCUGACUUUGC-AUAGACAAUAACCGCAUAUAGCACAGACGUCCACCG .(((((((((.(((.((((((((....)))))))).))).)))...))))))...((.(((-(((..(.......)..))).))).)).......... ( -24.10, z-score = -2.93, R) >droWil1.scaffold_180772 3593882 86 + 8906247 UUAUGCCAUUUGUUCUUUCACAAAUAAUGACUUUUCAUUCAAUUUAGCGCUAAAAAGUGACUACAUGUGACUAGGGAUUACCAUGG------------ .....((((..(((((((((((...(((((....))))).....(((((((....)))).)))..)))))..))))))....))))------------ ( -15.90, z-score = -1.32, R) >consensus UGGUUGAAUUCGCUUAGCGGUUAACAUUAACCGUUUAGCAAAUACAUCGACCUGACUUAGC_ACAGACAACAACCGCUCAUAGUACAGACG_CC_CC_ .(((((((((.(((.((((((((....)))))))).))).)))...)))))).............................................. ( -9.70 = -11.60 + 1.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:36 2011