| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,849,445 – 9,849,500 |
| Length | 55 |
| Max. P | 0.870030 |
| Location | 9,849,445 – 9,849,500 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 68.23 |
| Shannon entropy | 0.58399 |
| G+C content | 0.36901 |
| Mean single sequence MFE | -15.13 |
| Consensus MFE | -4.37 |
| Energy contribution | -3.56 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.69 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9849445 55 - 27905053 --GGAAAACUCAAAGC--AAACGUUUUGAUUUUCCAUUUGAGUUCCGUGUGGGAAGUUG- --((((((.(((((((--....)))))))))))))....((.((((.....)))).)).- ( -17.40, z-score = -2.90, R) >droSim1.chr3R 15937055 55 + 27517382 --GGAAAACUCAAAGC--AAACGUUUUGAUUUUCCAUUUGAGUUCCGUGUGGGAAGUUG- --((((((.(((((((--....)))))))))))))....((.((((.....)))).)).- ( -17.40, z-score = -2.90, R) >droYak2.chr3R 12248728 55 + 28832112 --GGAAAACUCAAAGC--AAACGUUUUGAUUUUCCAUUUGAGUUCCGUGUGGGAAGUUG- --((((((.(((((((--....)))))))))))))....((.((((.....)))).)).- ( -17.40, z-score = -2.90, R) >droEre2.scaffold_4770 9391205 55 - 17746568 --GGAAAACUCAAAGC--AAACGUUUUGAUUUUCCAUUUGAGUUCCGUGUGGGCAGUUG- --((((((.(((((((--....)))))))))))))......((((.....)))).....- ( -14.30, z-score = -1.57, R) >dp4.chr2 17245444 54 + 30794189 ----AAAAAUCAAAGCCAAAAAGUUUUGAUCUGUGAUUUUG--UGGGCGAAAACAGUUUG ----....((((((((......))))))))((((..(((((--....))))))))).... ( -10.40, z-score = -1.12, R) >droPer1.super_0 6900966 54 - 11822988 ----AAAAAUCAAAGCCAAAAAGUUUUGAUCUGUGAUUUUG--UGGGCGAAAACAGUUUG ----....((((((((......))))))))((((..(((((--....))))))))).... ( -10.40, z-score = -1.12, R) >droWil1.scaffold_181108 1989878 57 - 4707319 ACAGCAAGAUAUUACC--AAAAAUUGUUGUUUUUGGUUUAGUUUUUUUGCUGUAACGUG- (((((((((....(((--((((((....))))))))).......)))))))))......- ( -18.60, z-score = -4.87, R) >consensus __GGAAAACUCAAAGC__AAACGUUUUGAUUUUCCAUUUGAGUUCCGUGUGGGAAGUUG_ .........(((((((......)))))))....((((.((.....)).))))........ ( -4.37 = -3.56 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:03 2011