| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,829,886 – 9,829,983 |
| Length | 97 |
| Max. P | 0.644633 |
| Location | 9,829,886 – 9,829,983 |
|---|---|
| Length | 97 |
| Sequences | 9 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Shannon entropy | 0.41662 |
| G+C content | 0.48336 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -16.41 |
| Energy contribution | -16.79 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9829886 97 + 27905053 CGCUGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAG-------GUGGAGGUAACUCGGCGCUGACAACAAAACCAAACUAGAAGU ..((((..((((((((((...))))))))))((((...((((((........)))-------)))(((....))).))))................)))).... ( -27.30, z-score = -1.19, R) >droSim1.chr3R 15918290 97 - 27517382 CGCUGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAG-------GUGGAGGUAACUCGGCGCUGACAACAAAACCAAACUAGAAGU ..((((..((((((((((...))))))))))((((...((((((........)))-------)))(((....))).))))................)))).... ( -27.30, z-score = -1.19, R) >droSec1.super_0 8937020 97 - 21120651 CGCUGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAG-------GUGGAGGUAACUCGGCGCUGACAACAAAACCAAACUAGAAGU ..((((..((((((((((...))))))))))((((...((((((........)))-------)))(((....))).))))................)))).... ( -27.30, z-score = -1.19, R) >droYak2.chr3R 12230549 97 - 28832112 CGCUGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAG-------GUGGAGGUAACUCGGCGCUGACAACAAAACCAAACUAGAAGU ..((((..((((((((((...))))))))))((((...((((((........)))-------)))(((....))).))))................)))).... ( -27.30, z-score = -1.19, R) >droEre2.scaffold_4770 9373434 97 + 17746568 CGCUGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAG-------GUGGAGGUAACUCGGCGCUGGCAACAAAACCAAACUAGAAGU .((..((.((((((((((...))))))))))..((...((((((........)))-------)))(((....))).))))..)).................... ( -31.50, z-score = -2.15, R) >droAna3.scaffold_13340 3054779 88 - 23697760 UACUAGAAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAG-------GUGAAGGCCUCCUCGCGACAACCAC---------CUAGAAGU ..((((..((((((((((...))))))))))((((...((.......))((.(((-------((....))))).)))).))......---------)))).... ( -23.50, z-score = -1.12, R) >dp4.chr2 17222627 103 - 30794189 CAGAGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAGAAGCGAAGCAGAGGCGGUGGCGCAACGAGCG-ACAACAAAACUAGAAGU .....((.((((((((((...))))))))))((((.((((((((...(....).)))))...((....)).))))))).....)).-................. ( -30.30, z-score = -2.14, R) >droPer1.super_0 6875957 103 + 11822988 CAGAGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAGAAGCGAAGCAGAGGCGGUGGCGCAACGAGCG-ACAACAAAACUAGAAGU .....((.((((((((((...))))))))))((((.((((((((...(....).)))))...((....)).))))))).....)).-................. ( -30.30, z-score = -2.14, R) >droWil1.scaffold_181108 1969773 86 + 4707319 UAAAGUCAACCUUGGAAGUUAUUUUCAAGGUGUGCGCGCG--UCAAACGGAAGAG-------GUGGAGGCAACA--ACAACUACAAAAAAACAGAGU------- ....(((.((((((((((...)))))))))).....(((.--((........)).-------)))..)))....--.....................------- ( -17.10, z-score = -0.42, R) >consensus CGCUGGCAACCUUGGAAGUUAUUUUCAAGGUGUGCACACGCUUCAAACGGAAGAG_______GUGGAGGUAACUCGGCGCUGACAACAAAACCAAACUAGAAGU .....(((((((((((((...)))))))))).)))....(((((...(....).........((.(.(....).).)).....................))))) (-16.41 = -16.79 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:01 2011