| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,825,928 – 9,826,000 |
| Length | 72 |
| Max. P | 0.814259 |
| Location | 9,825,928 – 9,826,000 |
|---|---|
| Length | 72 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 96.70 |
| Shannon entropy | 0.05853 |
| G+C content | 0.41719 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -19.06 |
| Energy contribution | -19.06 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9825928 72 + 27905053 AUUGUGGUUGUUGUUGUCAUUUCCCAAAGGGGAUUUGCAAGGUAAUGGCAA--GAGCUUUUCCGACACUAAAUU ..(((((..(((.((((((((((((....))))..........))))))))--.)))....)).)))....... ( -18.00, z-score = -0.89, R) >droSim1.chr3R 15914545 74 - 27517382 AUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCAAAAGAGCUUUUCCGACACUAAAUU ....((((.(((.(((.((..((((....))))..)))))((....(((......)))...))))))))).... ( -20.40, z-score = -1.64, R) >droSec1.super_0 8933257 72 - 21120651 AUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAUUGGCAA--GAGCUUUUCCGACACUAAAUU ....((((.(((.(((.((..((((....))))..)))))((....(((..--..)))...))))))))).... ( -20.20, z-score = -1.63, R) >droYak2.chr3R 12226861 72 - 28832112 AUUGUGGUGGCUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCAA--GAGCUUUUCCGACACUAAAUU ..(((((.((((.((((((((((((....))))..........))))))))--.))))...)).)))....... ( -24.80, z-score = -2.74, R) >droEre2.scaffold_4770 9369565 72 + 17746568 AUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCAA--GAGCUUUUCCGACACUAAAUU ..(((((..(((.((((((((((((....))))..........))))))))--.)))....)).)))....... ( -20.70, z-score = -1.81, R) >consensus AUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCAA__GAGCUUUUCCGACACUAAAUU ...(((.......(((.((..((((....))))..)))))((....(((......)))...))..)))...... (-19.06 = -19.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:58 2011