| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,823,367 – 9,823,461 |
| Length | 94 |
| Max. P | 0.762668 |
| Location | 9,823,367 – 9,823,461 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 69.98 |
| Shannon entropy | 0.61011 |
| G+C content | 0.31700 |
| Mean single sequence MFE | -10.04 |
| Consensus MFE | -6.52 |
| Energy contribution | -6.55 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.47 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9823367 94 - 27905053 --UCUUUUUUUUUACCCUGUUAAUUUUUUGUACCUUUUGCC-UUACCCUUUUACACACGCAUUUGAGUUCAUGUAGAUUUCUAAAUGGAUUUC-AACU --.......................................-....................((((((((((.(((....))).))))).)))-)).. ( -8.00, z-score = -0.12, R) >droSim1.chr3R 15911960 90 + 27517382 ------UUUUUUAACCCUGUUAAUUUUUUGUACCUUUUGCC-UUACCUUUUUACACACGCAUUUGAGUUCAUGUAGAUUUCUAAAUGGAUUUC-AACU ------...................................-....................((((((((((.(((....))).))))).)))-)).. ( -8.00, z-score = 0.04, R) >droSec1.super_0 8930672 80 + 21120651 ---------------UUUUUUA--CCCCUGUACCUUUUGCCUUUACCUUUUUACACACGCAUUUGAGUUCAUGUAGAUCUCUAAAUGGAUUUC-AACU ---------------.......--......................................((((((((((.(((....))).))))).)))-)).. ( -8.00, z-score = -0.68, R) >droYak2.chr3R 12224304 89 + 28832112 ------UUUUUUUCCGCUGUUAA-UUUUUGUACCUUUUGCC-UUACCUUUUUACACACGCAUUUGAGUUCAUGUAGAUUUCUAAAUGGAUUUC-AACU ------.........((((((((-.....(((.........-.)))....))).))).))..((((((((((.(((....))).))))).)))-)).. ( -9.60, z-score = -0.43, R) >droEre2.scaffold_4770 9367053 86 - 17746568 --------UUUCUUCCCUGUUAA--UUUUGUACCUUUUGCC-UUACCUUUUUACACACGCAUUUGAGUUCAUGUAGAUUUCUAAAUGGAUUUC-AACU --------...............--................-....................((((((((((.(((....))).))))).)))-)).. ( -8.00, z-score = -0.00, R) >droAna3.scaffold_13340 3048607 96 + 23697760 UUUUUUUCUUCAAGCCCUCCCCUCUCCUUUUAAUUUUUGAA-CCUUUUUUUUACACGCAUCUGGAGGUUCAUGUAGAUUUCUAAAUGGAUUUC-AACU ........................((((((.(((((.((((-(((((...............)))))))))...)))))...))).)))....-.... ( -13.16, z-score = -0.56, R) >droWil1.scaffold_181108 1962563 79 - 4707319 -------------UAUGUAUAGUAGGUCUUUUUUUUUUACCUUUACCUUUU-----ACAUAUUUGACUUCAUGUAGAUUUCUAAAUGGAUUUC-AACU -------------((((((....((((.................))))..)-----))))).((((.(((((.(((....))).)))))..))-)).. ( -11.73, z-score = -1.30, R) >droGri2.scaffold_15074 3189006 94 - 7742996 --UCCACUCACAUUCUCCAUUGCCUUUUUUUUUUUGUUACCUGUAACAGUUA--AAACACCUUUGAGUUCAUGUAGAUUUCGAAAUGGAUUUCGAACU --.............((((((......((((..((((((....))))))..)--))).....(((((.((.....)).)))))))))))......... ( -13.80, z-score = -0.74, R) >consensus ______UUUUUUUUCCCUGUUAA_UUUUUGUACCUUUUGCC_UUACCUUUUUACACACGCAUUUGAGUUCAUGUAGAUUUCUAAAUGGAUUUC_AACU ................................................................((((((((.(((....))).))))))))...... ( -6.52 = -6.55 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:56 2011