| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,810,682 – 9,810,784 |
| Length | 102 |
| Max. P | 0.642737 |
| Location | 9,810,682 – 9,810,784 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 91.76 |
| Shannon entropy | 0.14525 |
| G+C content | 0.47647 |
| Mean single sequence MFE | -31.96 |
| Consensus MFE | -29.30 |
| Energy contribution | -29.42 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9810682 102 - 27905053 CUAAACUAUUUUUCCCUGUGCAUUUGAGUAGUGGUUGCUGUUGCAGUUGCAAUUGUUGCAAGUGGAUAACUGCUGCGGCCCGUCAUGGAUCGAGUGGAAAGA ...............((.(.(((((((...((((..(((((.((((((((.(((......))).).))))))).)))))...))))...))))))).).)). ( -28.40, z-score = -0.55, R) >droSim1.chr3R 15898325 102 + 27517382 CUAAACCAUUUUUCCCUGUGCAUUUGAGUAGUGGUUGCUGUUGCAGUUGCAAUUGUUGCAAGUGGAUAACUGCUGCGGCCCGCCAUGGAUCGAGUGGAAAGA ...............((.(.(((((((...(((((.(((((.((((((((.(((......))).).))))))).)))))..)))))...))))))).).)). ( -32.70, z-score = -1.49, R) >droSec1.super_0 8918292 102 + 21120651 CUAAACAAAUUUUCCCUGUGCAUUUGAGUAGUGGUUGCUGUUGCAGUUGCAAUUGUUGCAAGUGGAUAACUGCUGCGGCCCGCCAUGGAUCGAGUGGAAAGA ...............((.(.(((((((...(((((.(((((.((((((((.(((......))).).))))))).)))))..)))))...))))))).).)). ( -32.70, z-score = -1.63, R) >droYak2.chr3R 12211378 102 + 28832112 CCAAAAUAUUUCCCUCUGUGCAUUCGAGCAGUGGUUGCUGUUGCAGUUGCAAUUGUUGCAAGUGGAUAACUGCUUCGGCCCGCCAUGGAUCAAGUGGAAAGA ........(((((((..((.(((....((((..(((((..........)))))..))))..((((......((....)))))).))).))..)).))))).. ( -28.80, z-score = -0.22, R) >droEre2.scaffold_4770 9354446 102 - 17746568 ACAUAAUGGUUUUCUCUGUGCAUUCGAGUGGCGGUUGCUGUUGCAGUUGCAAUUGUUGCAAGUGGAUAACUGCUUCGGCCCGCCAUGGAUCGAGUGGAAAGA ..............(((.(.((((((((((((((..((((..((((((((.(((......))).).)))))))..)))))))))))...))))))).).))) ( -37.20, z-score = -2.22, R) >consensus CUAAACUAUUUUUCCCUGUGCAUUUGAGUAGUGGUUGCUGUUGCAGUUGCAAUUGUUGCAAGUGGAUAACUGCUGCGGCCCGCCAUGGAUCGAGUGGAAAGA ...............((.(.(((((((...(((((.((((..((((((((.(((......))).).)))))))..))))..)))))...))))))).).)). (-29.30 = -29.42 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:55 2011