| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,810,429 – 9,810,530 |
| Length | 101 |
| Max. P | 0.854764 |
| Location | 9,810,429 – 9,810,530 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.58 |
| Shannon entropy | 0.52972 |
| G+C content | 0.50622 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -20.07 |
| Energy contribution | -19.55 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9810429 101 + 27905053 UUGGGUGGCACAUUGUACUUGUACACGGCAUGUCUGUGAGUGUAUGUGUGUGUAUCCAAAUGGGGCGUUGUCGUU------GUCGGCGGCAUUAGCCAUCCAACUAC (((((((((((((...((.(((((((..(((....))).))))))).)))))).(((....)))..(((((((..------..)))))))....))))))))).... ( -35.40, z-score = -1.03, R) >droEre2.scaffold_4770 9354183 91 + 17746568 UUGGGUGGCACAUUGUACUUGUACU------CGCCAUGCUUGUGUG----UGUAUCCAAAUGGGGCGUUGUCGUU------GUCGACGGCAUUAGCCAUCCAACUAC (((((((((.((((......((((.------(((((....)).)))----.))))...))))....(((((((..------..)))))))....))))))))).... ( -32.50, z-score = -1.83, R) >droYak2.chr3R 12211108 103 - 28832112 UUGGGUGGCACAUUGUACUUGUACUUGUACUCGGCAUAUUUGUGUG----UGUAUCCAAAUGGGGCGUUGUCGUUGUCGUUGUCGGCGGCAUUAGCCAUCCAACUAC (((((((.(((((.((((........))))...(((....))))))----))))))))).((((((..((((((((.......))))))))...)))..)))..... ( -33.40, z-score = -1.39, R) >droSec1.super_0 8918039 101 - 21120651 UUGGGUGGCACAUUGUACUUGUACUCGACAUGUCUCUGUGUGUGUGUGUGUGUAUCCAAAUGGGGCGUUGUCGUU------GUCGGCGGCAUUAGCCAUCCAACUAC (((((((((.((((((((.(..((.((((((......)))).)).))..).))))...))))....(((((((..------..)))))))....))))))))).... ( -32.20, z-score = -0.59, R) >droSim1.chr3R 15898078 95 - 27517382 UUGGGUGGCACAUUGUACUUGUACUCGACAUGUCUCUCUGUGUG------UGUAUCCAAAUGGGGCGUUGUCGUU------GUCGGCGGCAUUAGCCAUCCAACUAC (((((((((....(((..(((.((.(((((((((((....((..------......))...)))))).)))))..------)))))..)))...))))))))).... ( -30.60, z-score = -1.33, R) >droGri2.scaffold_15110 15173339 96 + 24565398 --UUGUGGCCCAAAAUGUUUGUGCAC---AUUGCCAUGGCAACAAGUGCAAGCAGCCACGUUGCCUGGU-UGGCUA-----GUUGGCUGGGCAGGCCCAGAAACUAU --..(((((......((((((..(..---.((((....))))...)..)))))))))))...(((....-.)))((-----(((..(((((....))))).))))). ( -39.30, z-score = -1.12, R) >consensus UUGGGUGGCACAUUGUACUUGUACUCG_CAUGGCCAUGUGUGUGUG____UGUAUCCAAAUGGGGCGUUGUCGUU______GUCGGCGGCAUUAGCCAUCCAACUAC (((((((((.............................................(((....)))....(((((((.........)))))))...))))))))).... (-20.07 = -19.55 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:54 2011