| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,775,309 – 9,775,400 |
| Length | 91 |
| Max. P | 0.816163 |
| Location | 9,775,309 – 9,775,400 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 68.90 |
| Shannon entropy | 0.55600 |
| G+C content | 0.50263 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -11.86 |
| Energy contribution | -13.18 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9775309 91 + 27905053 UUGCUGCGGUGGCGAUAAUUUGUUAAUCGAAGCAUCCUCAUCGCAG-CUUGCACUUCGUCCAGAAAGUUCUUGUAAUCCUC------CGCGUGCUCUU ..((((((((((.(((..((((.....))))..))).)))))))))-)..(((((((.....))).......((.......------.)))))).... ( -26.50, z-score = -2.10, R) >droAna3.scaffold_13340 1129698 84 - 23697760 UUGCUGCGGUGGCGAUAAUUUGUUAAUCGAAGCAUCCGCAUCCCAGGCCAGCACUC--UCCAGUA-----CAGCAGCCACC-------AAAUGCUCCU ..((((((.(((((((.........)))((.((....)).))....)))).)(((.--...))).-----..)))))....-------.......... ( -18.60, z-score = 0.56, R) >droEre2.scaffold_4770 5891666 97 - 17746568 UUGCUGCGGUGGCGAUAAUUUGUUAAUCGAAGCAUCCUCAUCGCAG-CUUGCACUCCGUCCAGAAAGUUCUGGUAAUCCUCUCGCAACUCCUGCUCCU ..((((((((((.(((..((((.....))))..))).)))))))))-)((((.......(((((....)))))..........))))........... ( -28.73, z-score = -2.66, R) >droYak2.chr3R 14090738 93 + 28832112 UUGCUGCGGUGGCGAUAAUUUGUUAAUCGAAGCAUCCUCAUCGCAG-CUUGCACUCUGUCCAGAAAGUUCUGGCAAUCCUCUC----CCCUUGCUUCU ..((((((((((.(((..((((.....))))..))).)))))))))-)........((.(((((....)))))))........----........... ( -28.20, z-score = -2.61, R) >droWil1.scaffold_181108 1911010 85 + 4707319 UUGCUGCGGUGGCGAUAAUUUGUUAAUCGAAGUACAUCCACAUCCA-UCCACACAUCCUUCAGCU-----CAUCGGUCUCCCAUCUCGGCA------- .(((((.(((((.(((....((......((((..............-..........))))....-----))...)))..))))).)))))------- ( -14.86, z-score = 0.23, R) >consensus UUGCUGCGGUGGCGAUAAUUUGUUAAUCGAAGCAUCCUCAUCGCAG_CUUGCACUCCGUCCAGAAAGUUCUAGCAAUCCUC______CGCAUGCUCCU ...(((((((((.(((..((((.....))))..))).))))))))).................................................... (-11.86 = -13.18 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:51 2011