| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,769,499 – 9,769,610 |
| Length | 111 |
| Max. P | 0.806391 |
| Location | 9,769,499 – 9,769,610 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.11 |
| Shannon entropy | 0.46788 |
| G+C content | 0.53984 |
| Mean single sequence MFE | -40.10 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.04 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9769499 111 + 27905053 GAGCAGCGACAGGAUACACUGGGCUCCAAAAUCCGGGCAAGCGGCUAAGCUGUCU--AACGAGUCUCUAAUUUAUAGGCGACUUGGUGCGCAGUGUCCC-GCUCCGU-UGACAAA ..((((((...((..((((((.((.((.......(((((.((......)))))))--...(((((((((.....)))).))))))).)).)))))).))-....)))-)).)... ( -37.90, z-score = -1.11, R) >droSim1.chr3R 15859838 110 - 27517382 GAGCAGCGACAGGAUACACUGGGCUCCAAA-UCUGGGCAAGCGGCUAAGCUGUCU--AACGAGUCUCUAAUUUAUAGGCGACUUGGUGCGCAGUGUCCCCGCUC-GU-UGACAAA ..(((((((..((..((((((.((.((...-..((((((.((......)))))))--)..(((((((((.....)))).))))))).)).))))))..))..))-))-)).)... ( -42.60, z-score = -2.51, R) >droSec1.super_0 8880125 111 - 21120651 GAGCAGCGACAGGAUACACUGGGCUCCAAA-UCUGGGCAAGCGGCUAAGCUGUCU--AACGAGUCUCUAAUUUAUAGGCGACUUGGUGCGCAGUGUCCCCGCUCCGU-UGACAAA ..((((((...((..((((((.((.((...-..((((((.((......)))))))--)..(((((((((.....)))).))))))).)).))))))..))....)))-)).)... ( -40.30, z-score = -1.67, R) >droYak2.chr3R 14084776 112 + 28832112 GAGCAGAGACAGGAUACUCUGCGCUCCAAA-UCUGGGCACCGGACUAAGCUAUCUCUAACGAGUCUCUAAUUUAUAGGUGACUGGGUGCGCAGUGUCCC-GCUCCGU-UGACAAA .(((.(((.(.(((((((..((((.((...-(((((...))))).........(((....)))...........(((....))))).))))))))))).-)))).))-)...... ( -35.90, z-score = -1.14, R) >droEre2.scaffold_4770 5885663 110 - 17746568 GAGCAGCGACAGGAUACUCCGCGCUCCAAA-UCUGGGCACCGGGCUAAGCUGUCU--AACGAGUCUCUAAUUUAUAGGUGACUUGGUGUGCAGUGUCCC-GCUCCGU-UGACAAA ..((((((.(.(((((((.(((((.(((..-..)))))(((((((......))))--...(((((((((.....)))).))))))))))).))))))).-)...)))-)).)... ( -36.20, z-score = -0.94, R) >droAna3.scaffold_13340 1123950 86 - 23697760 --------------------GAGC----AAGGACAGGGCAGGG--CAGCCUGUCU--AACAAGUCUUUAAUUUAUAGGUGACUUGGGGCGCAGUGUCUC-GCUCCUCGUGACAAA --------------------((((----..((((((((((((.--...)))))))--..((((((((((.....)))).))))))........))))).-))))........... ( -27.10, z-score = -0.73, R) >dp4.chr2 17157828 105 - 30794189 --GCUCUGGCAGGACUAACCCCAU----GGGCCCAGGCCCGGGGUUAAGCUGUCU--AACGAGUCUCUAAUUUAUAGAUGGCUCGUUGCGCAGUGUCCC-GCUCCGU-UGACAAA --.....(((.(((((((((((..----((((....))))))))))).(((((.(--((((((((((((.....)))).))))))))).))))))))).-)))....-....... ( -50.40, z-score = -4.98, R) >droPer1.super_0 6810937 105 + 11822988 --GCUCUGGCAGGACUAACCCCAU----GGGCCCAGGCCCGGGGUUAAGCUGUCU--AACGAGUCUCUAAUUUAUAGAUGGCUCGUUGCGCAGUGUCCC-GCUCCGU-UGACAAA --.....(((.(((((((((((..----((((....))))))))))).(((((.(--((((((((((((.....)))).))))))))).))))))))).-)))....-....... ( -50.40, z-score = -4.98, R) >consensus GAGCAGCGACAGGAUACACUGCGCUCCAAA_UCCGGGCAAGGGGCUAAGCUGUCU__AACGAGUCUCUAAUUUAUAGGUGACUUGGUGCGCAGUGUCCC_GCUCCGU_UGACAAA ...........((((....................(((.....)))..(((((......((((((((((.....)))).))))))....)))))))))................. (-15.94 = -16.04 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:50 2011