| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,766,923 – 9,767,014 |
| Length | 91 |
| Max. P | 0.672516 |
| Location | 9,766,923 – 9,767,014 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.59 |
| Shannon entropy | 0.28868 |
| G+C content | 0.34732 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -10.90 |
| Energy contribution | -10.38 |
| Covariance contribution | -0.51 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672516 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 9766923 91 - 27905053 ----------------------GCCUGCG-----ACCGUUUCUCGGAAAUAAUUAUGCUACUUUUGU-GCAAGAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCG ----------------------....(((-----((((.....)))((((..((((((....(((((-((((((((......)))))))))))))..))))))..))))...))))... ( -24.40, z-score = -3.98, R) >droEre2.scaffold_4770 5883198 91 + 17746568 ----------------------GCCUGCG-----ACCGUUUCUCGGAAAUAAUUAUGCUACUUUUGC-GCAAGAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCC ----------------------....(((-----((((.....)))((((..((((((....((((.-.(((((((......)))))))..))))..))))))..))))...))))... ( -20.60, z-score = -2.67, R) >droYak2.chr3R 14082249 91 - 28832112 ----------------------GCCUGCG-----ACUGUUUCUCGGAAAUAAUUAUGCUACUUUUGC-GCAAGAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCC ----------------------....(((-----(.((((((...)))))).((((((....((((.-.(((((((......)))))))..))))..)))))).........))))... ( -18.60, z-score = -1.71, R) >droSec1.super_0 8877600 90 + 21120651 ----------------------GCCU-CG-----ACCGUUUCUCGGAAAUAAUUAUGCUACUUUUGU-GCAAGAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCC ----------------------((..-..-----.(((.....)))((((..((((((....(((((-((((((((......)))))))))))))..))))))..)))).....))... ( -22.20, z-score = -3.93, R) >droSim1.chr3R 15857044 91 + 27517382 ----------------------GCCUGCG-----ACCGUUUCUCGGAAAUAAUUAUGCUACUUUUGU-GCAAGAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCC ----------------------....(((-----((((.....)))((((..((((((....(((((-((((((((......)))))))))))))..))))))..))))...))))... ( -24.40, z-score = -4.14, R) >droWil1.scaffold_181108 1899748 112 - 4707319 CGCAACCUGAACCUAAACCUGAACCUGGG-----GACCUUUCUUGGAAAUAAUUAUGCUACUUUUGU-GCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCC- .((((((.(((......(((......)))-----.....)))..))((((..((((((....(((((-((((((((......)))))))))))))..))))))..))))...))))..- ( -26.70, z-score = -3.78, R) >droGri2.scaffold_14830 2431345 95 + 6267026 -------------------GGGUUUUUUG-----AGCUCUUCUCGGAAAUAAUUAUGCUGGUUUUGCAACAAAAGUAACAGCAUUUUUGAACAAAUUGCAUAAAAAUUUAAAUUGGCCG -------------------.(((((((((-----((.....))))))))...((((((....((((...(((((((......)))))))..))))..))))))............))). ( -18.00, z-score = -0.53, R) >droMoj3.scaffold_6540 19711520 98 - 34148556 --------------------AUUUUUUUGGCAGAGCCUGUUCUCGGAAAUAAUUAUGCUGCUUUUGC-GCAAAAGUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGGCCA --------------------.......((((.(((......)))..((((..((((((....((((.-.(((((((......)))))))..))))..))))))..))))......)))) ( -21.80, z-score = -0.52, R) >droVir3.scaffold_13047 516298 93 + 19223366 --------------------GGGGUUUCG-----UGCUGUUCUCGGAAAUAAUUAUGCUGCUUUUGC-GCAAAAGUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGGCCA --------------------..((((...-----..(((....)))((((..((((((....((((.-.(((((((......)))))))..))))..))))))..)))).....)))). ( -18.60, z-score = 0.16, R) >droAna3.scaffold_13340 1121311 91 + 23697760 ----------------------GGUUGGG-----ACAGUUUCUCGGAAAUAAUUAUGCUACUUUUGU-GCAAGAAUAACAGCAUUUUUGUACAAAUUGUAUAAAAAUUUAAAUUGCCCC ----------------------....(((-----.((((((.....((((..((((((....(((((-((((((((......)))))))))))))..))))))..))))))))))))). ( -23.90, z-score = -3.18, R) >dp4.chr2 17154940 93 + 30794189 --------------------GGCCCUGGG-----UCCGGUUCUCGGAAAUAAUUAUGCUACUUUUGU-GCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCC --------------------(((..((..-----((((.....))))..)).((((((....(((((-((((((((......)))))))))))))..))))))...........))).. ( -26.90, z-score = -3.42, R) >droPer1.super_0 6808042 93 - 11822988 --------------------GGCCCUGGG-----UCCGGUUCUCGGAAAUAAUUAUGCUACUUUUGU-GCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCC --------------------(((..((..-----((((.....))))..)).((((((....(((((-((((((((......)))))))))))))..))))))...........))).. ( -26.90, z-score = -3.42, R) >consensus ______________________GCCUGCG_____ACCGUUUCUCGGAAAUAAUUAUGCUACUUUUGU_GCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGCCCC ..............................................((((..((((((....((((...(((((((......)))))))..))))..))))))..)))).......... (-10.90 = -10.38 + -0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:49 2011