| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,766,451 – 9,766,553 |
| Length | 102 |
| Max. P | 0.654802 |
| Location | 9,766,451 – 9,766,553 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.73 |
| Shannon entropy | 0.14313 |
| G+C content | 0.33751 |
| Mean single sequence MFE | -19.16 |
| Consensus MFE | -16.24 |
| Energy contribution | -16.31 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654802 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 9766451 102 - 27905053 --GCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGC------ACUGAAAGGCAUAAAGA---------- --(((((.(((.((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))........------.))).))))).......---------- ( -19.82, z-score = -1.84, R) >droSim1.chr3R 15856565 102 + 27517382 --GCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGC------ACUGAAAGGCAUAAAGA---------- --(((((.(((.((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))........------.))).))))).......---------- ( -19.82, z-score = -1.84, R) >droSec1.super_0 8877127 102 + 21120651 --GCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGC------ACUGAAAGGCAUAAAGA---------- --(((((.(((.((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))........------.))).))))).......---------- ( -19.82, z-score = -1.84, R) >droYak2.chr3R 14081776 102 - 28832112 --GCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGC------ACUGAAAGGCAUAAAGA---------- --(((((.(((.((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))........------.))).))))).......---------- ( -19.82, z-score = -1.84, R) >droEre2.scaffold_4770 5882734 100 + 17746568 --GCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACU--CAGCCACGC------ACUGAAAGGCAUAAAGA---------- --(((((.(((.((((..((((.(((((((....)))).))).))))..)))).......................--..((...))------.))).))))).......---------- ( -19.80, z-score = -1.85, R) >droAna3.scaffold_13340 1120878 102 + 23697760 --GCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGC------ACUGAAAGGCAUAAAGA---------- --(((((.(((.((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))........------.))).))))).......---------- ( -19.82, z-score = -1.84, R) >dp4.chr2 17154451 108 + 30794189 --GCCUCGGAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGCACUGAAACUGAAAGGCAUAAAGA---------- --(((((((.((((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))......)).))))........))).......---------- ( -18.52, z-score = -1.01, R) >droPer1.super_0 6807547 108 - 11822988 --GCCUCGGAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGCACUGAAACUGAAAGGCAUAAAGA---------- --(((((((.((((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))......)).))))........))).......---------- ( -18.52, z-score = -1.01, R) >droWil1.scaffold_181108 1899348 102 - 4707319 --CCCUCGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUUACAGCCACGC------AUUGAAAGGCAUAAAAA---------- --.(((..((((((((..((((.(((((((....)))).))).))))..))))..((.((((.............)))).))...))------..))..)))........---------- ( -15.02, z-score = -0.89, R) >droVir3.scaffold_13047 515914 103 + 19223366 UCGCCUCGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCAACGC------ACUGAAAGGCAUAAAA----------- ..((((..(((.((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))........------.)))..))))......----------- ( -20.02, z-score = -2.45, R) >droMoj3.scaffold_6540 19711025 114 - 34148556 UCGCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCAACGC------AUUGAAAGGUAUAAGGCAUAAAAAAAA ..((((((..((((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))......))------(((....))).)))))).......... ( -19.72, z-score = -1.40, R) >droGri2.scaffold_14830 2430928 103 + 6267026 UCGCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCAACGC------AUUGAAAGGCAUAAAA----------- ..(((((.((((((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))......))------..)).)))))......----------- ( -19.22, z-score = -1.82, R) >consensus __GCCUUGCAGCGUUUUCAUUAAAUUCGCUUAAUAGCGCAAUAUAAUUUAAACAAGUAGUAACAUAAAAUAAAACUCACAGCCACGC______ACUGAAAGGCAUAAAGA__________ ..((((..(((.((((..((((.(((((((....)))).))).))))..))))..(((((.............))).))...............)))..))))................. (-16.24 = -16.31 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:47 2011