| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,764,762 – 9,764,882 |
| Length | 120 |
| Max. P | 0.588350 |
| Location | 9,764,762 – 9,764,882 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.24 |
| Shannon entropy | 0.03907 |
| G+C content | 0.35883 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -23.21 |
| Energy contribution | -23.36 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9764762 120 - 27905053 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUACGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.68, z-score = -1.24, R) >droSim1.chr3R 15854912 120 + 27517382 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUACGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.68, z-score = -1.24, R) >droSec1.super_0 8875540 120 + 21120651 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUACGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.68, z-score = -1.24, R) >droYak2.chr3R 14080118 120 - 28832112 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGGAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUACGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.88, z-score = -1.04, R) >droEre2.scaffold_4770 5881100 118 + 17746568 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAACAAC--AUAAAUUGCAUCUGCCAGAUACGCAAUUAUUACGAG ..(((((((.......((((((((..........(((((........)))))...(((((((................))))--)))....))).))))).......)))))))...... ( -23.53, z-score = -1.67, R) >droAna3.scaffold_13340 1119542 120 + 23697760 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.68, z-score = -1.29, R) >dp4.chr2 17152981 120 + 30794189 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.68, z-score = -1.29, R) >droPer1.super_0 6806071 120 - 11822988 CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.68, z-score = -1.29, R) >droWil1.scaffold_181108 1898135 120 - 4707319 CUGUGAUUGAGACUGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -24.68, z-score = -1.22, R) >droVir3.scaffold_13047 514680 120 + 19223366 CUGUGAUUGAGACCGAGGCAGUGUUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -23.08, z-score = -0.81, R) >droMoj3.scaffold_6540 19709812 120 - 34148556 CUGUGAUUGAGACCGAGGCAGUGUUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -23.08, z-score = -0.81, R) >droGri2.scaffold_14830 2429502 120 + 6267026 CUGUGAUUGAGACCGAGGCAGUGUUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... ( -23.08, z-score = -0.81, R) >consensus CUGUGAUUGAGACCGAGGCAGUGCUCGAAACGAAGUUAAAAAUCAAAUUAGCGAAUGUGUUGAAAAUUAAAAACAAAUUCACGGAUAAAUUGCAUCUGCCAGAUACGCAAUUAUUAUGAG ..(((((((.......((((((((......((..(((((........)))))((((.((((..........)))).)))).))........))).))))).......)))))))...... (-23.21 = -23.36 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:46 2011