| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,763,616 – 9,763,722 |
| Length | 106 |
| Max. P | 0.804360 |
| Location | 9,763,616 – 9,763,722 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.02 |
| Shannon entropy | 0.35148 |
| G+C content | 0.32431 |
| Mean single sequence MFE | -21.59 |
| Consensus MFE | -13.20 |
| Energy contribution | -12.70 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9763616 106 - 27905053 GGAUAUCUCAAGGAUAAGGAUAUCCAGGAUGAACACAUUUUACAGCAUAC--UUUUAGGAGCAAAUUAAAAUGUUUUCCAACUUCGAGAGAUUCCUUUUACUUUAUGA-------- (((.(((((..(((((....))))).(((.....((((((((..((...(--.....)..))....))))))))..)))........)))))))).............-------- ( -21.20, z-score = -1.50, R) >droEre2.scaffold_4770 5879948 110 + 17746568 UGAUUUCU----GAUAAGGAUAUAGGGGAUGCUCACAUUUUACAGCAUAC--UUUAAGGAGCAGAUUAAAUUGUUUUCCAACAUCUAGAGAUUUCUGAAAUAUCCGUACAUAACAA ........----.....((((((.((..((.(((.....(((.((....)--).)))(((((((......))))..)))........)))))..))...))))))........... ( -17.20, z-score = 0.27, R) >droSec1.super_0 8874403 112 + 21120651 GGAUAUCC----AAUAAGGAUAUCCAGGAUGAACACAUUUUACAGCAUACAAAAGUAGGAGCAUAUUAAAUUGUUUUCCAACUUCGAGAGAUUUCUUAAAUACACUUACAUUUUGA ((((((((----.....))))))))((((((....))))))........((((((((((((.(((......))).))))....((....))...............))).))))). ( -24.10, z-score = -3.52, R) >droSim1.chr3R 15853776 110 + 27517382 GGAUAUCC----AAUAAGGAUAUCCAGGAUGAACACACUAUACAGCAUAC--UUUUAGGAGCAAAUUAAAUUGUUUUCCAACUUCGAGAGAUUUCUGUAAUACCCUUACAUUUUAA ((((((((----.....))))))))((((((.........(((((.....--.....(((((((......))))..)))....((....))...))))).........)))))).. ( -23.87, z-score = -3.04, R) >consensus GGAUAUCC____AAUAAGGAUAUCCAGGAUGAACACAUUUUACAGCAUAC__UUUUAGGAGCAAAUUAAAUUGUUUUCCAACUUCGAGAGAUUUCUGAAAUACCCUUACAUUUUAA ((((((((.........))))))))((((............................((((((........)))..)))....((....)).)))).................... (-13.20 = -12.70 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:45 2011