| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,752,762 – 9,752,857 |
| Length | 95 |
| Max. P | 0.742615 |
| Location | 9,752,762 – 9,752,857 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.69 |
| Shannon entropy | 0.52249 |
| G+C content | 0.42844 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -14.17 |
| Energy contribution | -13.91 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9752762 95 + 27905053 --------AACAACAAAA-AGUGGGAGCUCCUAAUUUAUGUGAGGCAAGUGCUCGCUUUGGCGCUCAUUUAAUAAUUGCACGAGGCCUGGAGGUCUCAUUACCA-- --------..........-(((((((.((((........(((((.(....))))))...(((.(((...............)))))).)))).)))))))....-- ( -27.86, z-score = -1.29, R) >droSim1.chr3R 15842586 95 - 27517382 --------AACAACAAAA-AAUGGGAGCUCCUAAUUUAUGUGAGGCAAGUGCUCGCUUUGGCGCUCAGUUAAUAAUUGCACGAGGCCUGGAGGUCUCAUUACCA-- --------..........-(((((((.((((...........((((..((((.....(((((.....))))).....))))...)))))))).)))))))....-- ( -30.00, z-score = -2.05, R) >droSec1.super_0 8863718 91 - 21120651 --------AACAACAAAA-AGUGGGAGCUCCUAAUUUAUGUGAGGCAAGUGC----UUUGGCGCUCAUUUAAUAAUUGCACGAGGCCUGGAGGUCUCAUUACCA-- --------..........-(((((((.((((..........(((((....))----)))(((.(((...............)))))).)))).)))))))....-- ( -26.46, z-score = -1.41, R) >droYak2.chr3R 14068210 95 + 28832112 --------AACAACAAAA-AGUGGGAGCCCCUAAUUUAUGUGAGGCAAGUGCUCGCUUUGGCGCUCAUUUAAUAAUUGCACGAGGCCUGGAGGUCUCAUUACCA-- --------..........-..(((((((.((........(((((.(....))))))...)).))))...............((((((....))))))....)))-- ( -25.10, z-score = -0.17, R) >droEre2.scaffold_4770 5868959 95 - 17746568 --------AACAACAAAA-AGUGGGAGCUCCUAAUUUAUGUGAGGCAAGUGCUCGCUUUGACGCUCAUUUAAUAAUUGCACGAGGCCUGGAGGUCUCAUUACCA-- --------..........-(((((((.((((...........((((..((((.....((((.......)))).....))))...)))))))).)))))))....-- ( -26.00, z-score = -1.16, R) >droAna3.scaffold_13340 1106930 103 - 23697760 -CAACAAUAAGAAAAAAAUACUGUCAGCUUCUAAUUUAUGGGAGGCGAGUGCUCGCUUUGGCGCUCAUUUAAUAAUUGCACGAGGCCUGGAGGUCUCAUUACGG-- -...................((((..((((((........))))))(((((((......)))))))...............((((((....))))))...))))-- ( -28.90, z-score = -2.10, R) >droPer1.super_0 6794650 102 + 11822988 --AACUACAACAAAAAAA--CUUCCAGCUUCUAAUUUAUGUGCGGCAAGUGCUCGCUUUGGCGCUCAUUUAAUAAUUGCACGAUGCCUGGAGGUCUCAUUACUGCU --...............(--((((((((.(((((((.(((.(((.(((((....)).))).))).))).....)))))...)).).))))))))............ ( -22.60, z-score = -0.56, R) >dp4.chr2 17141567 95 - 30794189 --AACUACAACAAAAAAA--CUUCCAGCUUCUAAUUUAUGUGCGGCAAGUGCUCGCUUUGGCGCUCAUUUAAUAAUUGCACGAUGCCUGGAGGUCUCAU------- --...............(--((((((((.(((((((.(((.(((.(((((....)).))).))).))).....)))))...)).).)))))))).....------- ( -22.60, z-score = -1.17, R) >droWil1.scaffold_181108 1886550 104 + 4707319 AUGGGUGUAGUGGACCAUAUAAGGCAGACACUAAUUUAUGUAUGGCAAGUGCUCGGUUUUGUGCUCAUUUAAUAAUUGCACGAUGCCUUGAGGUAUCAUUACUA-- ......((((((((((...(((((((((((((...............)))).))....((((((.............))))))))))))).))).)))))))..-- ( -27.28, z-score = -0.76, R) >droVir3.scaffold_13047 503049 97 - 19223366 ---AAUAGGGCGCGUCA-UGUGCUC---CAUUAAUUUAUGUAUGGCAAGUGCUCGGUUUUGUGCUCAUUUAAUAAUUGCACGAUGCCUUAAGGUAUCAUUACGG-- ---....((((((....-..((((.---(((......)))...)))).))))))......((((.............))))((((((....)))))).......-- ( -25.42, z-score = -0.98, R) >droMoj3.scaffold_6540 19695437 98 + 34148556 ---AAUCGGGUGCGUCAAUGGAGUC---CAUUAAUUUAUGUAUGGCAAGUGCUCGGUUUUGCGCUCAUUUAAUAAUUGCACGAUGCCUGAAGGUAUCAUUACGG-- ---....(((((((..(((.(((((---(((..........)))).....)))).))).)))))))...............((((((....)))))).......-- ( -26.10, z-score = -0.90, R) >droGri2.scaffold_14830 2417958 85 - 6267026 ----------------AAUGUGGUC---CAUUAAUUUAUGUAUGGCAAGUGCUCGGUUUUGUGCUCAUUUAAUAAUUGGACGAUGCCUCAAGGUAUCAUUACAG-- ----------------..(((((((---((.....((((..(((...((..(........)..)))))...)))).)))))((((((....))))))..)))).-- ( -22.20, z-score = -1.90, R) >consensus ________AACAACAAAA_AGUGGCAGCUCCUAAUUUAUGUGAGGCAAGUGCUCGCUUUGGCGCUCAUUUAAUAAUUGCACGAGGCCUGGAGGUCUCAUUACCA__ ............................................((((((((........)))))...........)))..((((((....))))))......... (-14.17 = -13.91 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:43 2011