| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,747,184 – 9,747,285 |
| Length | 101 |
| Max. P | 0.589476 |
| Location | 9,747,184 – 9,747,285 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.40 |
| Shannon entropy | 0.22837 |
| G+C content | 0.40441 |
| Mean single sequence MFE | -17.68 |
| Consensus MFE | -16.01 |
| Energy contribution | -16.18 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9747184 101 - 27905053 ---CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACGUAUCCCAAAAACUGGAGUCCC---------------- ---.((((((((((.((......)).)......(((((........)))))............)))))))))...............(((.....)))......---------------- ( -18.70, z-score = -1.48, R) >droAna3.scaffold_13340 1101724 117 + 23697760 ---CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACGUGUCCCCAAAAACCCAACAUCAGAGCUGGAGUUCCAC ---.((((((((((.((......)).)......(((((........)))))............))))))))).....................((((((.(......).))).))).... ( -19.90, z-score = -0.25, R) >droEre2.scaffold_4770 5862916 101 + 17746568 ---CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACGCGUCCCAAAAACUGGAGUCCC---------------- ---.((((((((((.((......)).)......(((((........)))))............)))))))))...............(((.....)))......---------------- ( -18.70, z-score = -0.97, R) >droYak2.chr3R 14062069 101 - 28832112 ---CGCGUAAGUUGUCAUGUUUUUAUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAAUGCGUCCCAAAAACUGUAGUCCC---------------- ---.(((((((((((.(((....))).))....(((((........)))))............)))))))))................................---------------- ( -16.40, z-score = -1.36, R) >droSec1.super_0 8858010 101 + 21120651 ---AGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACGUGUCCCAAAAACUGGAGUCCC---------------- ---.((((((((((.((......)).)......(((((........)))))............)))))))))...............(((.....)))......---------------- ( -18.60, z-score = -1.06, R) >droSim1.chr3R 15836970 101 + 27517382 ---CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACGUGUCCCAAAAACUGGAGUCCC---------------- ---.((((((((((.((......)).)......(((((........)))))............)))))))))...............(((.....)))......---------------- ( -18.70, z-score = -1.08, R) >droPer1.super_0 6788972 99 - 11822988 ---CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACG--UCCCAAAAACCGGAGUCCC---------------- ---.((((((((((.((......)).)......(((((........)))))............)))))))))...........--(((........))).....---------------- ( -18.50, z-score = -1.45, R) >dp4.chr2 17135895 99 + 30794189 ---CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACG--UCCCAAAAACCGGAGUCCC---------------- ---.((((((((((.((......)).)......(((((........)))))............)))))))))...........--(((........))).....---------------- ( -18.50, z-score = -1.45, R) >droWil1.scaffold_181108 1880803 98 - 4707319 ---CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACG---CCCAAAAGAAAAAGCCCC---------------- ---.((((((((((.((......)).)......(((((........)))))............)))))))))...........---..................---------------- ( -17.00, z-score = -1.21, R) >droVir3.scaffold_13047 498377 101 + 19223366 CGCCGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACA---CCCAAAUCCAGUUGUACG---------------- ....((((((((((.((......)).)......(((((........)))))............)))))))))...........---..................---------------- ( -17.00, z-score = -1.00, R) >droMoj3.scaffold_6540 19689750 101 - 34148556 CGCCGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACA---CCCAAAUCCAGUUGAGCA---------------- .((.((((((((((.((......)).)......(((((........)))))............)))))))))...........---..(((......))).)).---------------- ( -18.10, z-score = -0.87, R) >droGri2.scaffold_14830 2412434 101 + 6267026 CGCCUCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACA---CCCAAAUCCAGUUGAACG---------------- .....(((((((((.((......)).)......(((((........)))))............))))))))............---..................---------------- ( -12.10, z-score = 0.36, R) >consensus ___CGCGUAAGUUGUCAUGUUUUUGUCGCUUUAUGGACUUCUAAUCGUUCAAUUCUAUCAAAAAGCUUACGCACUAACAAACG__UCCCAAAAACUGGAGUCCC________________ ....((((((((((.((......)).)......(((((........)))))............)))))))))................................................ (-16.01 = -16.18 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:39 2011