| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,744,656 – 9,744,749 |
| Length | 93 |
| Max. P | 0.623579 |
| Location | 9,744,656 – 9,744,749 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.48 |
| Shannon entropy | 0.49893 |
| G+C content | 0.48999 |
| Mean single sequence MFE | -25.29 |
| Consensus MFE | -14.09 |
| Energy contribution | -13.85 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9744656 93 + 27905053 ---CCUUUCCCUUGCACCCCGCAAAUCGGGGGGCUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUCCGC------------------- ---.(((...(((((.(((((.....))))).)).))).))).........(((((((((.....(.((.....))).....))))))))).....------------------- ( -26.50, z-score = -0.92, R) >droPer1.super_0 6786490 86 + 11822988 ---GCUGUGCCUCACUCUC----AAU---GAGGUUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACA--AUCCCC----------------- ---(((..((((((.....----..)---)))))..)))............(((((((((.....(.((.....))).....))))))))--).....----------------- ( -22.50, z-score = -1.62, R) >dp4.chr2 17133404 86 - 30794189 ---GCUGUGCCUCACUCUC----AAU---GAGGUUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCUACAAUGGCGACA--AUCCCC----------------- ---(((..((((((.....----..)---)))))..)))............(((((((((.....(.((.....))).....))))))))--).....----------------- ( -22.50, z-score = -1.70, R) >droAna3.scaffold_13340 1099418 91 - 23697760 UCAAGUCCCUCCGAGUCUC----AAU---GGGGUUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACACAAUCCCC----------------- ...................----...---((((((...(((....)))....((((((((.....(.((.....))).....)))))))).)))))).----------------- ( -18.10, z-score = 0.44, R) >droEre2.scaffold_4770 5860399 90 - 17746568 ---CCUGCUCCCUACCCUC--AAUAC-GGGGGACUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUCCGC------------------- ---..((((.....(((((--.....-)))))....))))...........(((((((((.....(.((.....))).....))))))))).....------------------- ( -22.30, z-score = -0.68, R) >droYak2.chr3R 14059549 95 + 28832112 ---CCUAUUCCCUACCCCC--AAAAC-GGGGGGCUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUCCAAUCCGC-------------- ---...........(((((--.....-)))))...................(((((((((.....(.((.....))).....)))))))))..........-------------- ( -24.70, z-score = -1.01, R) >droSec1.super_0 8855726 92 - 21120651 ---CCUUUCCCUUGCCCCCCAAAAGU-GGGGGGCUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUCCGC------------------- ---.(((...(((((((((((....)-))))))).))).))).........(((((((((.....(.((.....))).....))))))))).....------------------- ( -33.00, z-score = -2.92, R) >droSim1.chr3R 15834510 92 - 27517382 ---CCUUUUCCUUGCCCCCCAAAAAU-GGGGGGCUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACCAUCCGC------------------- ---.......(((((((((((....)-))))))).)))...(((........((((....))))((((...))))(((.....)))))).......------------------- ( -30.60, z-score = -2.40, R) >droVir3.scaffold_13047 495844 103 - 19223366 -----CCUAUGCAGCACUC----AAU---GAGGUUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUGAGCGUAGCUAAAACAACGCUGC -----.....(((((.(((----(((---((..(.....)..)))))....(((((((((.....(.((.....))).....))))))))).))).((.......))...))))) ( -24.90, z-score = -0.32, R) >droMoj3.scaffold_6540 19686946 103 + 34148556 -----CCUAUGAAACUCUC----AAU---GAGGUUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUGAGCGUAGCGAAUUCAACGCUGC -----...........(((----(((---((..(.....)..)))))....(((((((((.....(.((.....))).....))))))))).))).((((((.......)))))) ( -24.20, z-score = -0.50, R) >droGri2.scaffold_14830 2409647 105 - 6267026 -----CCUAUGCAGCUCUCU--CAAU---GAGGUUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUGAGCGUAGCGAAUCCACCGCUGC -----........((((...--.(((---((..(.....)..)))))....(((((((((.....(.((.....))).....))))))))).))))((((((.......)))))) ( -28.90, z-score = -1.06, R) >consensus ___CCUCUACCCUACUCUC____AAU___GGGGUUAAGUAAGUCAUUAAAUUUGUCGCUAGACACGACCAUGUUGGCCACAAUGGCGACAAUCCGC___________________ ...............((((..........))))...................((((((((.....(.((.....))).....))))))))......................... (-14.09 = -13.85 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:38 2011