| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,735,307 – 9,735,403 |
| Length | 96 |
| Max. P | 0.671217 |
| Location | 9,735,307 – 9,735,403 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 88.62 |
| Shannon entropy | 0.23321 |
| G+C content | 0.37260 |
| Mean single sequence MFE | -24.44 |
| Consensus MFE | -16.90 |
| Energy contribution | -16.74 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9735307 96 - 27905053 AGGGGUGGGCCUUGUCUAAUGUUUUAAUUUGAUUUUAAAACGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAGCACUCC-CUCACCC---------------- ..(((((((....((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-))..))...-)))))))---------------- ( -25.52, z-score = -2.65, R) >droSim1.chr3R 15825249 96 + 27517382 AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAACGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAGCACUCC-CUCACCC---------------- ..(((((((....((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-))..))...-)))))))---------------- ( -25.52, z-score = -2.54, R) >droSec1.super_0 8846412 96 + 21120651 AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAACGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAGCACUCC-CUCACCC---------------- ..(((((((....((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-))..))...-)))))))---------------- ( -25.52, z-score = -2.54, R) >droYak2.chr3R 14049975 96 - 28832112 AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAACGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAGCACUCC-CUCACCC---------------- ..(((((((....((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-))..))...-)))))))---------------- ( -25.52, z-score = -2.54, R) >droEre2.scaffold_4770 5850899 96 + 17746568 AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAACGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAGCACUCC-CUCACCC---------------- ..(((((((....((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-))..))...-)))))))---------------- ( -25.52, z-score = -2.54, R) >droAna3.scaffold_13340 1089221 96 + 23697760 AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAAUGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAACAAUCU-CUCACCC---------------- ..(((((((...(((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-)))))....-)))))))---------------- ( -23.12, z-score = -2.42, R) >dp4.chr2 17123421 96 + 30794189 AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAAUGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAGCAUUCU-CUCACUC---------------- ..(((((((...(((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-)))))....-)))))))---------------- ( -20.42, z-score = -1.53, R) >droPer1.super_0 6776443 96 - 11822988 AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAAUGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG-CAGCAUUCU-CUCACUC---------------- ..(((((((...(((....(((((((.((((((......(((((((((...)))))).))).......)))))).)))))-)))))....-)))))))---------------- ( -20.42, z-score = -1.53, R) >droWil1.scaffold_181108 1867228 101 - 4707319 AGGGGUGGGCCCUG-GUAAUGUUUUAAUUUGAUUUUAAAAUGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAGAGUCACCUCUCUACUCUCCCAUUC------------ ..(((.(((((.((-(....(((((((.......)))))))(((....)))......))).))............(((((......)))))))).)))....------------ ( -19.50, z-score = -0.03, R) >droVir3.scaffold_13047 485025 95 + 19223366 AGGGGUGGGCCCGG-CUAAUGUUUUAAUUUGAUUUUAAAAUGAUGUUAAUCUAAUAUCUGUGGAAAAUGUCAAAAUAAAG-CGCAGCCAU-CUCGCUU---------------- ..(((((((...((-((..(((((((.(((((((((.....(((((((...))))))).....)))..)))))).)))))-)).))))..-)))))))---------------- ( -24.80, z-score = -1.95, R) >droMoj3.scaffold_6540 19674114 113 - 34148556 AGGGGUGGGCCCUG-CUAAUGUUUUAAUUUGAUUUUAAAAUGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUACAGCGAGAGGUGCAGCAACAGUGCUGCCAUCUCGCUC .((((....)))).-............((((((......(((((((((...)))))).))).......))))))....(((((((.(.((((((....))))))).))))))). ( -33.02, z-score = -2.07, R) >consensus AGGGGUGGGCCCUGUCUAAUGUUUUAAUUUGAUUUUAAAAUGAUGUUAAUCUAAUAUCCGUGGAAAAUGUCAAAAUAAAG_CAGCACUCC_CUCACCC________________ ..(((((((..........(((((((.((((((......(((((((((...))))))).)).......)))))).))))).))........)))))))................ (-16.90 = -16.74 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:37 2011