| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,726,187 – 9,726,300 |
| Length | 113 |
| Max. P | 0.893140 |
| Location | 9,726,187 – 9,726,300 |
|---|---|
| Length | 113 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 65.03 |
| Shannon entropy | 0.74772 |
| G+C content | 0.40255 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -10.25 |
| Energy contribution | -9.99 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.76 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9726187 113 - 27905053 CCAUAGCUUUCGGUUCGAAUCGACGCAAGGCAUAAACAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAAUG-----CUGUCGAAAGUUC .....((..(((((....)))))(....)))......(((((((((((((((((.(((((....)))))...))))))))...........(((.....)-----)).))))))))). ( -27.60, z-score = -1.30, R) >droSim1.chr3R 15816197 113 + 27517382 CCAUCGCUUUCGGUUCGAAUCGACGCAAGGCAUAAACAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAAUG-----CUGUCGAAAGUUC .....((..(((((....)))))(....)))......(((((((((((((((((.(((((....)))))...))))))))...........(((.....)-----)).))))))))). ( -27.70, z-score = -1.10, R) >droSec1.super_0 8837361 103 + 21120651 ----------CCAUCGGUUUCGGUUCGAAUCUUUCGAAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAAUG-----CUGUCGAAAGUUC ----------...((((.((((...))))....))))(((((((((((((((((.(((((....)))))...))))))))...........(((.....)-----)).))))))))). ( -25.30, z-score = -1.26, R) >droYak2.chr3R 14040757 113 - 28832112 CCAUCGCUUUCGGUUCGAAUCGAGGCAAGGCAUAAACAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAAUG-----CUGUCGAAAGUUC .....(((((.(.((((...)))).))))))......(((((((((((((((((.(((((....)))))...))))))))...........(((.....)-----)).))))))))). ( -29.70, z-score = -1.71, R) >droEre2.scaffold_4770 5841313 113 + 17746568 CCAUCGCUUUCGGUUCGAAUCGACGCCAGGCAUAAACAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAAUG-----CUGUCGAAAGUUC .....((((..((((((...))).)))))))......(((((((((((((((((.(((((....)))))...))))))))...........(((.....)-----)).))))))))). ( -28.20, z-score = -1.19, R) >droAna3.scaffold_13340 1080383 113 + 23697760 ACAACGAUUUCGCUUCGAAUCAGCGCGAGGCAUAAAAAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAAUU-----UUGUUGAAAGUUC .((((((((((((((.((((((((.....)).............((((((((((.(((((....)))))...))))))))))))))).).))))))))))-----..))))....... ( -31.90, z-score = -3.00, R) >dp4.chr2 17113462 110 + 30794189 ---ACAAUUUCGAUCCGACUCGACGCGAGGCAAAAACAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAACG-----CCGUGGAAAGUUC ---......((((......))))(....)........(((((((((((((((((.(((((....)))))...))))))))))......((.((((...))-----)).))))))))). ( -27.90, z-score = -1.38, R) >droWil1.scaffold_181108 1856974 96 - 4707319 ---------UCGGUCAGUGCAAGUGAAAUGCGGAAUGAAAUAGCAA-UUCAUUAAAUCACAAUUAUGUUGCUUAAUGGCCUCUGAUUACACGA------------UUUUCGAGAGCUU ---------..(((((..(((((((((.(((...........))).-)))))).....(((....))))))....)))))..........((.------------....))....... ( -17.10, z-score = 0.76, R) >droMoj3.scaffold_6540 19663582 94 - 34148556 ----------------------CGAUUGCAUUCGGUGACCAAGCGGCGCUAUUAGAGCAUAAUUAUGCUGAUUAAUGAGCUACGUGUACAGGGCAUAGCAAUCA--AAUCGAAAGAUC ----------------------.((((((.....(((.((..(((..(((((((((((((....)))))..))))).)))..)))......))))).)))))).--.(((....))). ( -26.10, z-score = -1.68, R) >droVir3.scaffold_13047 474784 96 + 19223366 ----------------------ACAUUGUGUUCCCUACCCGGACAGACCCAUAAAGGCGUAAUUACCCCGCCUAAUGGGCUUUAUAUACACGAAAAAAAAAAUACUGAUGGAAAGUUC ----------------------...(((((((((......))).((.(((((..(((((.........))))).)))))))......))))))......................... ( -19.70, z-score = -0.99, R) >consensus ____CG_UUUCGGUUCGAAUCGACGCAAGGCAUAAACAACUUUCGAGUCCAUUAAAGCGUAAUUAUGUUGACUAAUGGAUUUUGAUUACAAGGCGAAAUG_____CUGUCGAAAGUUC ..........................................((((((((((((.(((((....)))))...))))))).)))))................................. (-10.25 = -9.99 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:36 2011