| Sequence ID | dm3.chr2L |
|---|---|
| Location | 685,851 – 685,958 |
| Length | 107 |
| Max. P | 0.863171 |
| Location | 685,851 – 685,958 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 86.32 |
| Shannon entropy | 0.23075 |
| G+C content | 0.43180 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -24.58 |
| Energy contribution | -24.38 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.863171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 685851 107 - 23011544 CUCCAAAGUCGCCAUUCCGAAGGUGAUUUAAGGCACCUCAAGAGUUUAACCAAUAUGGAAAACGGAAAUAUAGUUUCCAAGCCACAGCUGUUUUUGGCUGACACAGG--------- ..((.((((((((........))))))))..(((.........((((..((.....)).))))((((((...))))))..))).(((((......))))).....))--------- ( -28.60, z-score = -1.99, R) >droEre2.scaffold_4929 748091 105 - 26641161 --CUAAACUCGCCAUUCCGAGGGCGAUUAAAGGCACCUUAAGAGUUUAACCAAUAUGGAAAACGGAAAUAUAAUUUCCAAGCCCCAGCUGUUUUUGGCUGAUACAGA--------- --......(((((........))))).....(((.........((((..((.....)).))))((((((...))))))..))).(((((......))))).......--------- ( -25.50, z-score = -1.39, R) >droYak2.chr2L 676931 114 - 22324452 --CUAAAGUCGCCAUUCUGAAGGCGAUUAAAGGCACCUCAAGAGUUUAACCAAUAUGGAAAACGGAAAUAUAAUUUCCAAGUUACAGCUGUUUUUGGCUGCUUUGGCUGACACAGA --(((((((.((((((((..(((.(........).)))..)))))............((((((((((((...)))))).(((....)))))))))))).))))))).......... ( -27.60, z-score = -0.98, R) >droSec1.super_14 667157 107 - 2068291 CCCCAAAGUCGCCAUUCCGAAGGUGAUUAAAGGCACCUCAAGAGUUCAGCCAAUAUGGAAAACGGAAAUAUAGUUUCGAAGCCACAGCUGUUUUUGGCUGAUACAGA--------- .((...(((((((........)))))))...))..........((((((((((.........(((((......))))).(((....)))....)))))))).))...--------- ( -26.00, z-score = -1.11, R) >droSim1.chr2L 696609 107 - 22036055 CCCCAAUGUCGCCAUUCCGUAGGUGAUUAAAGGCACCUCAAGAGUUCAGCCAAUAUGGAAAACGGAAAUAUAGUUUCCAAGCCACAGCUGUUUUUGGCUGAUACAGA--------- .((....((((((........))))))....))..........((((((((((......((((((((((...)))))).(((....))))))))))))))).))...--------- ( -27.90, z-score = -1.62, R) >consensus C_CCAAAGUCGCCAUUCCGAAGGUGAUUAAAGGCACCUCAAGAGUUUAACCAAUAUGGAAAACGGAAAUAUAGUUUCCAAGCCACAGCUGUUUUUGGCUGAUACAGA_________ ......(((((((........)))))))...(((.........(((...((.....))..)))((((((...))))))..))).(((((......)))))................ (-24.58 = -24.38 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:39 2011