| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,707,784 – 9,707,875 |
| Length | 91 |
| Max. P | 0.931095 |
| Location | 9,707,784 – 9,707,875 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 59.72 |
| Shannon entropy | 0.73514 |
| G+C content | 0.41659 |
| Mean single sequence MFE | -17.49 |
| Consensus MFE | -6.31 |
| Energy contribution | -6.34 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.85 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9707784 91 - 27905053 --------ACUCCAUCUAAUAUUGAAUCGGGCAACACACCCACCGAAACCGA------AAC----CCUCGUCAUUUGAGAGCCAAACCGUUUGGCUUGAUU--GCCUUAUC-- --------....................((((((.........((((..(((------...----..)))...)))).(((((((.....)))))))..))--))))....-- ( -17.40, z-score = -1.22, R) >droSim1.chr3R 15797915 97 + 27517382 --------ACUCCAUCUAAUAUUGAAACGGGCAACACACCCACCGAAACCGAAACCAUAAC----CCUCAUCAUUUGAGAGCCAAACAGUUUGGCUUGAUU--GCCUUAUC-- --------....................((((((((.........................----.((((.....))))((((((.....)))))))).))--))))....-- ( -17.80, z-score = -1.87, R) >droSec1.super_0 8819174 97 + 21120651 --------ACUCGAUCUAAUAUUGAAACGGGCAACACACCCACCGAAACCGAAACCGAAAC----CCUCAUCAUUUGAGAGCCAAACAGUUUGGCUUGAUU--GCCUUAUC-- --------..(((((.....)))))...((((((((.........................----.((((.....))))((((((.....)))))))).))--))))....-- ( -18.80, z-score = -1.75, R) >droYak2.chr3R 14021782 91 - 28832112 --------ACUCGAUCUAAUAUUGAAACGGGCAACACACCCACCG------AAACCGAAAC----CCUCAUCAUCUGAGAGCCAAACAGUUUGGCUUGAUU--GCCUUAUC-- --------..(((((.....)))))...((((((((.........------..........----.((((.....))))((((((.....)))))))).))--))))....-- ( -18.00, z-score = -1.70, R) >droEre2.scaffold_4770 5822572 90 + 17746568 --------ACCCGAUCUAAUAUUAAAAC-GGCAACACACCCACCGAAACCGA------AAC----CCUCAUCAUUUGAGAGCCAAACAGUUUGGCUUGAUU--GCCUUAUC-- --------....................-(((((((................------...----.((((.....))))((((((.....)))))))).))--))).....-- ( -17.30, z-score = -2.82, R) >droAna3.scaffold_13340 1062935 87 + 23697760 -----------AUACCAAUUAUUAGAUC-AGUAGUAUAAAUGCAGUA----------UUAU----AGUUAUUGCAAGGUAUACCUACUUUCUGUCCUAAUUAGAUCCCAUCUC -----------.....(((((.((((..-(((((((((..(((((((----------....----...)))))))...)))).))))).))))...)))))............ ( -16.90, z-score = -2.23, R) >droWil1.scaffold_181108 1838323 112 - 4707319 AUGUAUCUGCAUUAUUUAAAAUUUGUAU-GUUCUUUUAGCUGAUGUCUACGACGCCCAUGUUUUGCAUAUUCGUUGGAAAAUCAGAUUAGUAUUUCUGCUUCCAUUUCUUGUC ..(((...((((((.((((((.......-....)))))).)))))).)))((((...(((.....)))...))))((((...((((........)))).)))).......... ( -16.20, z-score = 0.14, R) >consensus ________ACUCGAUCUAAUAUUGAAACGGGCAACACACCCACCGAAACCGA__CC_AAAC____CCUCAUCAUUUGAGAGCCAAACAGUUUGGCUUGAUU__GCCUUAUC__ .............................(((..................................((((.....))))((((((.....)))))).......)))....... ( -6.31 = -6.34 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:30 2011