| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,702,775 – 9,702,873 |
| Length | 98 |
| Max. P | 0.507260 |
| Location | 9,702,775 – 9,702,873 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 69.06 |
| Shannon entropy | 0.62470 |
| G+C content | 0.32820 |
| Mean single sequence MFE | -17.39 |
| Consensus MFE | -7.34 |
| Energy contribution | -7.47 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.507260 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9702775 98 - 27905053 GAAGGUGCUUCCACUGGAAGAACCUAAUUUUAGUCGACUUUAAUUAGUUUGCUGAAAUGCUAAGUAAACCUUAUUCGAAGAACAUUAUAAUUGUUACU ..((((.(((((...))))).)))).((((((((.((((......)))).))))))))....(((((...((((............))))...))))) ( -21.00, z-score = -2.08, R) >droAna3.scaffold_13340 1058338 82 + 23697760 GAGGGAGUAUCCAUUGGAAGGCCGUAGUUUCAGCCGACUUUAAUUAGUUUGGUUAAAAGCAAAGAAAGGAAUAUUAGUUACU---------------- .....(((((((...((....))...((((.((((((((......)).))))))..)))).......)).))))).......---------------- ( -12.00, z-score = 0.94, R) >droEre2.scaffold_4770 5817525 98 + 17746568 GAGGGUGCUUCCACUGGAAGAACCUAAUCUUAGGCGACUUUAAUUAGUUUGCUUAAAUGCUAAGUAAACCUUAUUUGAAGAACAUUAUAAUUGUUACU ..((((.(((((...))))).))))............((((((.(((((((((((.....)))))))))..)).))))))((((.......))))... ( -22.30, z-score = -1.95, R) >droYak2.chr3R 14016615 98 - 28832112 GAGGGUGCUUCCACUGGAAGAACCUAAUUUUAGGCGACUUUAAUUAGUUUGCUUAUACGCUAAGUAAACCUUAUUCGAAGAACAUUAUAAUUGUUACU ((((((.(((((...))))).)))(((((..((....))..)))))(((((((((.....)))))))))....)))....((((.......))))... ( -21.30, z-score = -1.67, R) >droSec1.super_0 8814208 98 + 21120651 GAGGGUGCUUCCACUGGAAGAACCUAAUUUUAGUCGACUUUAUUUAGUUUGCUAAAAUGCUAAGUAAACCUUUUUUGAAGAACAUUAUAAUUGUUACU ..((((.(((((...))))).)))).((((((((.((((......)))).))))))))......................((((.......))))... ( -20.50, z-score = -1.57, R) >droSim1.chr3R 15792434 98 + 27517382 GAUGGUGCUUCCACUGGAAGAACCUAAUUUUAGUCGACUUUAAUCAGUUUGCUAAAAUGCUCAGUAAACCUUUUUCGAAGAACAUUAUAAUUGUUACU ...(((.(((((...))))).)))..((((((((.((((......)))).))))))))......................((((.......))))... ( -18.40, z-score = -1.12, R) >droMoj3.scaffold_6540 19637744 82 - 34148556 GGGAGAACGUUUUAUAUACAAAUUUACGAACAUUUGCACUCAUUUAUUUCAAUAUA----UAAAUACUGUUACUUUGACUUUCAUU------------ (..((..(((...((......))..)))..((...(((...((((((........)----)))))..))).....)).))..)...------------ ( -6.20, z-score = -0.03, R) >consensus GAGGGUGCUUCCACUGGAAGAACCUAAUUUUAGUCGACUUUAAUUAGUUUGCUAAAAUGCUAAGUAAACCUUAUUCGAAGAACAUUAUAAUUGUUACU ..((((.(((((...))))).))))......(((.((((......)))).)))............................................. ( -7.34 = -7.47 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:29 2011