| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,696,462 – 9,696,558 |
| Length | 96 |
| Max. P | 0.764531 |
| Location | 9,696,462 – 9,696,558 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.77 |
| Shannon entropy | 0.44283 |
| G+C content | 0.46147 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.32 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9696462 96 + 27905053 UUCCUUUUUUUCCUCCAGCUUUGUGGACACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCUGGCCA---- ..............(((((...(((((((((..((......))(((((......))))).................)))))))))...)))))...---- ( -33.50, z-score = -4.27, R) >droAna3.scaffold_13340 1052284 91 - 23697760 -----UUUGUUUUUUAGGUGCGGA---CACAAAAGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCCGGCCUCCC- -----...........((((((((---((((............(((((......)))))((((((...))))))..)))))))))...)))........- ( -27.00, z-score = -1.98, R) >droEre2.scaffold_4770 5810860 94 - 17746568 --UUUCUUUUUUCUGCAGCUUUGUGGACACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCUGGCCA---- --.............((((...(((((((((..((......))(((((......))))).................)))))))))...))))....---- ( -31.20, z-score = -3.00, R) >droYak2.chr3R 14009952 95 + 28832112 -UUCCUUUUUUUCUGCAGUUUUGUGGACACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCUGGCCA---- -..........((.((((....(((((((((..((......))(((((......))))).................))))))))).)))).))...---- ( -29.70, z-score = -2.54, R) >droSec1.super_0 8807950 96 - 21120651 UUUCCUUUUUUCCUCCAGCUUUGUGGACACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCUGGCCA---- ..............(((((...(((((((((..((......))(((((......))))).................)))))))))...)))))...---- ( -33.50, z-score = -4.27, R) >droSim1.chr3R 15786101 96 - 27517382 UUUCUUUUUUUCCUCCAGCUUUGUGGACACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCUGGCCA---- ..............(((((...(((((((((..((......))(((((......))))).................)))))))))...)))))...---- ( -33.50, z-score = -4.18, R) >droPer1.super_0 6736262 93 + 11822988 UUCGGUUUUUUCCUCCCAUUUGGU---CACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCCCGGCUGCCAA---- ...(((..((((((.....(((..---..)))))))))..((((.(((.....((((((((((((...))))))).))))).))).)))).)))..---- ( -26.10, z-score = -1.41, R) >dp4.chr2 17083406 93 - 30794189 UUCGGUUUUUUCCUCCCAUUUGGU---CACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCCCGGCUGCCAA---- ...(((..((((((.....(((..---..)))))))))..((((.(((.....((((((((((((...))))))).))))).))).)))).)))..---- ( -26.10, z-score = -1.41, R) >droMoj3.scaffold_6540 19630148 93 + 34148556 UUCCUUCUUUUUUUAUAGAGGGCCAAGCACAAA-GAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUUUUCUGUU------ ..((((((........))))))....((((...-(....)...))))(((((.((((((((((((...))))))).)))))....)))))....------ ( -20.00, z-score = -0.67, R) >droVir3.scaffold_13047 442391 82 - 19223366 --------CCGCUUGUUGAAGGGC---CACAAA-GAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUUUGCUGUU------ --------.........((((((.---((((..-.........(((((......)))))((((((...))))))..)))).)).))))......------ ( -16.40, z-score = 0.97, R) >droGri2.scaffold_14830 2356524 92 - 6267026 CUGUUUUUUUUUUUAU----GGCU---CACAAA-GAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCGCUUGCUGCU ..((...(((((.(((----(((.---......-......)))))).))))).))(((((...(((((((....))).)))).....)))))........ ( -18.52, z-score = 0.47, R) >consensus UUCCUUUUUUUCCUCCAGCUUGGU___CACAAAGGAAACCGCCGUGCGAAAAUACGCGCAAUUGACAAUUAAUUGAUGUGUCCGCUCUGCUGGCCA____ ........................................((.(.(((.....((((((((((((...))))))).))))).))).).)).......... (-12.38 = -12.32 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:27 2011