| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,682,079 – 9,682,171 |
| Length | 92 |
| Max. P | 0.910780 |
| Location | 9,682,079 – 9,682,171 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.34 |
| Shannon entropy | 0.50957 |
| G+C content | 0.44293 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -12.53 |
| Energy contribution | -12.54 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9682079 92 - 27905053 -----CCUUCCUCUACUUCGACUGUUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAA----------------------- -----.....(((((((..((((..(((((......))))).............((((((((........)))))))).....)))).)))))))..----------------------- ( -23.50, z-score = -1.82, R) >droSim1.chr3R 15771777 92 + 27517382 -----CCUUCCUCUACUUCGACUGUUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAA----------------------- -----.....(((((((..((((..(((((......))))).............((((((((........)))))))).....)))).)))))))..----------------------- ( -23.50, z-score = -1.82, R) >droSec1.super_0 8793725 92 + 21120651 -----CCUUCCUCUACUUCGACUGUUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAA----------------------- -----.....(((((((..((((..(((((......))))).............((((((((........)))))))).....)))).)))))))..----------------------- ( -23.50, z-score = -1.82, R) >droYak2.chr3R 13994596 92 - 28832112 -----CCUCCCUCAGCUUCGACUGUUUUAUGGGCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAUUCGCGGUGGAGAA----------------------- -----.((((.((.((((((((((((.....)))).....................((((((........))))))))))))....)))).))))..----------------------- ( -24.10, z-score = -0.88, R) >droEre2.scaffold_4770 5795641 92 + 17746568 -----CCGCCCUCUGCUUCGACUGCUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAUGUUCGGUGGAGAA----------------------- -----(((((......((((((.((.((((...................)))).))((((((........))))))))))))......)))))....----------------------- ( -25.91, z-score = -1.77, R) >droAna3.scaffold_13340 1038930 115 + 23697760 -----CCUCCCUUCGUUUCGACUGUUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGAAAAAAAGUUCCAAAACGGUCUGGUCGAUGGAGAA -----.((((..(((.(..(((((((((..........................((((((((........))))))))......(((......))).)))))))))..).))).)))).. ( -30.20, z-score = -2.17, R) >dp4.chr2 17068731 108 + 30794189 CCUCGCCUCCCCCGGCUUCGACUGUUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAGAGAGUUCCGAAACUCUUGGUGGAGAA------------ ......((((.((....(((((...(((((......)))))...............((((((........)))))))))))(((((((....))))))))).))))..------------ ( -31.40, z-score = -1.86, R) >droPer1.super_0 6721547 108 - 11822988 CCUCGCCUCCCCCGGCUUCGACUGUUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAGAGAGUUCCGAAACUCUUGGUGGAGAA------------ ......((((.((....(((((...(((((......)))))...............((((((........)))))))))))(((((((....))))))))).))))..------------ ( -31.40, z-score = -1.86, R) >droWil1.scaffold_181108 1812236 85 - 4707319 -----UAUUCAACAAUUUCGACUGUUUUAUGGGCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAAUGCGACCACGUCGUAAGAGAGAG------------------------------ -----................((.(((((((((((..................)))(((((((.....)).))))).)))))))).))..------------------------------ ( -16.57, z-score = -0.83, R) >droVir3.scaffold_13047 424387 88 + 19223366 -----CCGCCUCCUGCUUCGACUGUUUUAUGACCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCUUGA----CCGGGCUGGA----------------------- -----...((.((((..((((....(((((......))))).............((((((((........)))))))).))))----.))))..)).----------------------- ( -19.60, z-score = -0.25, R) >droMoj3.scaffold_6540 19609555 99 - 34148556 -----CCUCCUCCAGCUUCGACUGUUUUAUGACCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCUCCAAACUCCAAGCUCCAAGCUGGA---------------- -----.....((((((((.((((..(((((......)))))..........((.((((((((........)))))))).)).........)).)).))))))))---------------- ( -27.40, z-score = -3.98, R) >droGri2.scaffold_14830 2337754 78 + 6267026 -----CCUCCUCCUGCUUCGACUGUUUUAUGACCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCUCAG------------------------------------- -----....................(((((......))))).........(((.((((((((........)))))))).))).------------------------------------- ( -15.70, z-score = -2.16, R) >consensus _____CCUCCCUCUGCUUCGACUGUUUUAUGGCCAAAUAAAUAAUUAAAAUGAUGCGUGGUGUUAAGUGCCGCCACGUCGAAAAGUUCGGUGGAGAA_______________________ ...................(((...(((((......)))))...............((((((........)))))))))......................................... (-12.53 = -12.54 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:26 2011