| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,656,039 – 9,656,135 |
| Length | 96 |
| Max. P | 0.699720 |
| Location | 9,656,039 – 9,656,135 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 67.23 |
| Shannon entropy | 0.63587 |
| G+C content | 0.37900 |
| Mean single sequence MFE | -22.17 |
| Consensus MFE | -10.45 |
| Energy contribution | -9.98 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699720 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9656039 96 + 27905053 UUACGAAGUUUGUGUGUAAUAUCGGGGGUUGUGUCUUGUGUUUAGGCUAUAAAUGGCAUAUUAAUACA------UACUUGUGUUUAACCCUCGAGUGCCUAG---------- ...............(((...((((((((((((((...(((.......)))...)))))...((((((------....)))))).))))))))).)))....---------- ( -23.50, z-score = -1.02, R) >droSim1.chr3R 15746230 96 - 27517382 UUAAGCAGCUUGUGUGUAAUAUCGGGGGUUGUGUCUUGUGUUUAGGCUAUAAAUGGCAUAUUAAUACA------UACUUGUGUUUAACCCUGGAGUGCCUAG---------- ....(((((......))....((.(((((((((((...(((.......)))...)))))...((((((------....)))))).)))))).)).)))....---------- ( -20.80, z-score = 0.75, R) >droSec1.super_0 8768689 96 - 21120651 UUACGCAGUUUGUGUGUAAUAUCGGGGGUUGUGUCUUGUGUUUAGGCUAUAAAUGGCAUAUUAAUACA------UACUUGUGUUUAACCCUCGAGUGCCUAG---------- (((((((.....)))))))..((((((((((((((...(((.......)))...)))))...((((((------....)))))).)))))))))........---------- ( -26.80, z-score = -1.76, R) >droYak2.chr3R 13966226 95 + 28832112 -UUCGAAGUUUGUGUGUAAUAUCGGGGGUUGUGUCUUCUGUUUAGGCUAUAAAUGGGAUAUUAAUACA------UACUUCUGUUUAACCCUUGAGUGCCUAG---------- -...(((((.(((((.((((((((((((......)))))(((((.....)))))..))))))))))))------.)))))......................---------- ( -19.80, z-score = -0.32, R) >droEre2.scaffold_4770 5770404 94 - 17746568 -UUCGAAGUUUGUGUGUAAUAUCGGGGGUUGUGUCUUCUGUUUAGGCUAUAAAUGGCAUAUUAAUA-A------UACUUCUGUUUAACCCCUGAGUGCCUAG---------- -..............(((...((((((((((...((.......))((((....)))).........-.------..........)))))))))).)))....---------- ( -19.30, z-score = -0.38, R) >droAna3.scaffold_13340 17982540 92 + 23697760 -CUCGUUGUUUGUGUGUAAUCUUGGGGGUUGUGUCUUCUGUUUAAGCAAUAAAUGGCACAUAAAUACA------UACUUUGGUUUAACCCACGGCUGCC------------- -...(((((..((((((((((.....)))((((((...((((.....))))...))))))....))))------)))...((......)))))))....------------- ( -16.90, z-score = 1.01, R) >dp4.chr2 15650646 106 + 30794189 ------UUUGCUUGUGUAAUCUUGGGGGUUGUGUCUUCUGUUUAGGAUAUAAAUGCGAUAUAAAUACAGAUGACUACUUGUUCUUAACCCCCGACUGACAUUGGGGGUUAAG ------.((((....))))......((((...(((.(((((.....((((.......))))....))))).))).))))...((((((((((((......)))))))))))) ( -30.60, z-score = -2.43, R) >droPer1.super_0 7060512 106 - 11822988 ------UUUGUUUGUGUAAUCUUGGGGGUUGUGUCUUCUGUUUAGGAUAUAAAUGCGAUAUAAAUACAGAUGACUACUUGUUCUUAACCCCCGACUGACAUAGGGGGUUAAG ------.(..(((((((....(((.(..(((((((((......))))))))).).))).....)))))))..).........((((((((((..........)))))))))) ( -30.60, z-score = -2.29, R) >droVir3.scaffold_12822 1648162 72 + 4096053 -UUUUAAGUUUUUGU--AAACUUGUGGGUUGUGCC-------------ACAAACG-CACAUA-------------AAAUAGUUUUAACCCAUGAGAGUUGAG---------- -..............--...((..((((((((((.-------------......)-)))...-------------(((....)))))))))..)).......---------- ( -16.00, z-score = -1.52, R) >droMoj3.scaffold_6540 22684310 84 - 34148556 -AUUUAUUUUUUUGU--AAUCUGGUGGGUUGUGCCUUGUAUUUAGGCUGCAAAUG-CAUAUA-------------AAAUAGGUUUAACCCAUG-GCGUCGCA---------- -...........((.--.((.(.((((((((.((((....((((...(((....)-))..))-------------))..)))).)))))))).-).))..))---------- ( -22.30, z-score = -1.42, R) >droGri2.scaffold_14624 2693323 85 + 4233967 -UUUUAUUUUUUUGUGUAAUCUUGUGGGUUGUGCCUCGUGUUUAGGCCACAAAUG-CAUAUAUA-----------AAAUAUGUUUAACCCAUGUCAAA-------------- -......................(((((((((((((.......))).)))....(-(((((...-----------..))))))..)))))))......-------------- ( -17.30, z-score = -1.26, R) >consensus _UUCGAAGUUUGUGUGUAAUCUCGGGGGUUGUGUCUUCUGUUUAGGCUAUAAAUGGCAUAUAAAUACA______UACUUGUGUUUAACCCACGAGUGCCUAG__________ .....................((((((((((.....................................................)))))))))).................. (-10.45 = -9.98 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:16 2011