| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,624,578 – 9,624,674 |
| Length | 96 |
| Max. P | 0.510035 |
| Location | 9,624,578 – 9,624,674 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 81.09 |
| Shannon entropy | 0.36622 |
| G+C content | 0.50116 |
| Mean single sequence MFE | -23.84 |
| Consensus MFE | -15.85 |
| Energy contribution | -15.90 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9624578 96 + 27905053 AUUAUUAACGCAGCCAUUGACACAUUGGGCCUUGGCCAGAAAACACAGACAACUGAGGACCAUUGUCCAGUUGACGGAUACGGGCCAUUCCCGUAC .............((.(..((......(((....)))........(((....))).((((....)))).))..).)).((((((.....)))))). ( -25.20, z-score = -1.23, R) >droSim1.chr3R 15713788 96 - 27517382 AUUAUUAACGCAGCCAUUGACACAUUGGACCUUGGCCAGGAAACCCAGACAACUGAGGACCAUUGUCCAGUUGACGGAUACGGUCCAUUCCCGUAC .............((.(..((....(((((..(((((.(....).(((....))).)).)))..)))))))..).)).(((((.......))))). ( -25.60, z-score = -1.47, R) >droSec1.super_0 8737605 96 - 21120651 AUUAUUAACGCAGCCAUUGACACAUUGGACCUUGGCCAGGAAACACAGACAACUGAGGACCAUUGUCCAGUUGACGGAUACGGUCCAUUCCCGUAC .............((.(..((....(((((..(((((.(....).(((....))).)).)))..)))))))..).)).(((((.......))))). ( -26.70, z-score = -2.04, R) >droYak2.chr3R 13933654 96 + 28832112 AUUAUUAACGCAGCCAUUGACACAUUGGACCUUGGCCAGGAAACGCAGACAACUGAGGACCAUUGUCCAGUUGACGGAUACGGUCCAUUCCCGUAC .............((.(..((....(((((..(((((.(....).(((....))).)).)))..)))))))..).)).(((((.......))))). ( -26.40, z-score = -1.67, R) >droEre2.scaffold_4770 5738820 96 - 17746568 AUUAUUAACGCAGCCAUUGACACAUUGGACCUUGGCCAUUGAACAUAGACAACUGAGGACCAUUGUCCAGUCGACGGACACGGUCCAUUCCCGUAC ............(((.((((((((.(((.(((..(...(((........))))..))).))).)))...))))).)).)((((.......)))).. ( -22.20, z-score = -0.69, R) >droAna3.scaffold_13340 17949784 82 + 23697760 AUUAUUAACGCAGCCAUUGACACAUUGGACCUUGGACGGCAGAGG---------ACAGAUCAUUGUCCAGUUGACUGAUACGGUUCAUCCU----- .........................((((((.((..((((((.((---------((((....))))))..))).))).)).))))))....----- ( -17.00, z-score = 0.10, R) >dp4.chr2 15619487 75 + 30794189 AUUAUUAACGCAGCCGUUGACACAUUGGACCUUGGCCAUU----------------GGCCCAUUGUCCAGUUGACGGAUACGGUCCAGCCC----- ........((...((((..((....(((((..(((((...----------------)).)))..)))))))..))))...)).........----- ( -23.80, z-score = -1.88, R) >droPer1.super_0 7029465 75 - 11822988 AUUAUUAACGCAGCCGUUGACACAUUGGACCUUGGCCAUU----------------GGCCCAUUGUCCAGUUGACGGAUACGGUCCAGCCC----- ........((...((((..((....(((((..(((((...----------------)).)))..)))))))..))))...)).........----- ( -23.80, z-score = -1.88, R) >consensus AUUAUUAACGCAGCCAUUGACACAUUGGACCUUGGCCAGGAAACACAGACAACUGAGGACCAUUGUCCAGUUGACGGAUACGGUCCAUUCCCGUAC ........((...((.(((((....(((((..(((((...................)).)))..)))))))))).))...)).............. (-15.85 = -15.90 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:12 2011