| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,597,963 – 9,598,060 |
| Length | 97 |
| Max. P | 0.518556 |
| Location | 9,597,963 – 9,598,060 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.94 |
| Shannon entropy | 0.32921 |
| G+C content | 0.35419 |
| Mean single sequence MFE | -19.44 |
| Consensus MFE | -8.61 |
| Energy contribution | -9.21 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9597963 97 - 27905053 CAACAAAUUAUCCUCGAGUUU--CCAGCGUGG-UUAGCACUUUAGCCACGUCAUAAAUC-CUCCUU---------ACAAGUUUU--CCGUAAUUAUGA---AUAAUUAGGGAAAA----- ...............(((..(--...((((((-((((....)))))))))).....)..-)))...---------.....((((--((.((((((...---.)))))).))))))----- ( -22.50, z-score = -3.41, R) >droGri2.scaffold_14624 2621693 110 - 4233967 CCACAAAUUAUCCUUGAGUUUUCCCAGUUUGAUUUAGCACCUUAGCCACGUCAUAAAUU-CUCC-UUUUAUUCUUUCGAAUUUUUCCCGUAAUUAUGU---AUAAUUAGGAAAAA----- ...............((((((........((((...((......))...)))).)))))-)...-...............(((((((..((((((...---.)))))))))))))----- ( -10.70, z-score = -0.01, R) >droMoj3.scaffold_6540 22614691 114 + 34148556 CAACAAAUUAUCCUUGAGUUCUCCCAGUGUGG-UUAGCACGUUAGCCACGUCAUAAAUU-CUCC-UUUUAUUCUUUCGACUUUUUCCCGUAAUUAUGU---AUAAUUAGGAAAAAAUAUA ...............(((.........(((((-((((....))))))))).........-))).-...............(((((((..((((((...---.)))))))))))))..... ( -18.67, z-score = -1.68, R) >droVir3.scaffold_12822 1579810 114 - 4096053 CAACAAAUUAUCCUUGAGUUUUCCCAGUUUGG-UUAGCACUGUAGCCACGUCAUAAAUUCCUCCUUUAUAUGCUUUCGUAUUUUUCCCGUUAUUAUUAUUGAUAAUUCGGAAAAA----- ...............((((((........(((-(((......))))))......)))))).........((((....))))((((((.(((((((....)))))))..)))))).----- ( -15.94, z-score = -0.72, R) >droWil1.scaffold_181130 11053054 109 - 16660200 CAACAAAUUAUCCUUGAGUUUUCCCAGUGUGG-UUAAUACUUUAGCCACGUCAUAAAUU-CUCCUUUUUAUUUUCUCGAACUUUU-CCGUAAUUAUUG---AUAAUUAGGAAAAA----- .............(((((........((((((-((((....))))))))).)(((((..-......)))))...)))))..((((-((.((((((...---.)))))))))))).----- ( -21.00, z-score = -2.85, R) >droSec1.super_0 8711216 97 + 21120651 CAACAAAUUAUCCUCGAGUUU--CCAGCGUGG-UUAGCACUUUAGCCACGUCAUAAAUC-CUCCUU---------ACAAGUUUU--CCGUAAUUAUGA---AUAAUUAGGGAAAA----- ...............(((..(--...((((((-((((....)))))))))).....)..-)))...---------.....((((--((.((((((...---.)))))).))))))----- ( -22.50, z-score = -3.41, R) >droSim1.chr3R 15688864 97 + 27517382 CAACAAAUUAUCCUCGAGUUU--CCAGCGUGG-UUAGCACUUUAGCCACGUCAUAAAUC-CUCCUU---------ACAAGUUUU--CCGUAAUUAUGA---AUAAUUAGGGAAAA----- ...............(((..(--...((((((-((((....)))))))))).....)..-)))...---------.....((((--((.((((((...---.)))))).))))))----- ( -22.50, z-score = -3.41, R) >dp4.chr2 10146503 106 - 30794189 CAACAAAUUAUCCUCGAGUUU--CCAGCGCGG-UUACAACUUUAGCCACGUCAUAAAUU-CUCCUUUUUUUCUUCGCAACUUUC--CCGUAAUUAUGA---ACAAUUAGGAAAAA----- ...............((((((--...(((.((-(((......))))).)))...)))))-)((((..(((((......((....--..))......))---).))..))))....----- ( -16.30, z-score = -1.62, R) >droPer1.super_0 1488174 106 + 11822988 CAACAAAUUAUCCUCGAGUUU--CCAGCGCGG-UUACAACUUUAGCCACGUCAUAAAUU-CUCCUUUUUUUCUUCGCAACUUUC--CCGUAAUUAUGA---ACAAUUAGGAAAAA----- ...............((((((--...(((.((-(((......))))).)))...)))))-)((((..(((((......((....--..))......))---).))..))))....----- ( -16.30, z-score = -1.62, R) >droEre2.scaffold_4770 5711638 97 + 17746568 CAACAAAUUAUCCUCGAGUUU--CCAGCGUGG-UUAGCACUUUAGCCACGUCAUAAAUC-CUCCUU---------GCAAAUUUU--CCGUAAUUAUGA---AUAAUUAGGGAAAA----- ...............(((..(--...((((((-((((....)))))))))).....)..-)))...---------.....((((--((.((((((...---.)))))).))))))----- ( -22.60, z-score = -3.20, R) >droYak2.chr3R 13906524 97 - 28832112 CAACAAAUUAUCCUCGAGUUU--CCAGCGUGG-UUAGCACUUUAGCCACGUCAUAAAUC-CUCCUU---------ACAAGUUUU--CCGUAAUUAUGA---AUAAUUAGGGAAAA----- ...............(((..(--...((((((-((((....)))))))))).....)..-)))...---------.....((((--((.((((((...---.)))))).))))))----- ( -22.50, z-score = -3.41, R) >droAna3.scaffold_13340 17923578 97 - 23697760 CAACAAAUUAUCCUCGAGUUU--CCAGCGUGG-UCAACACGUUAGCCACGUCAUAAAUU-CUCCUU---------GCAAGUUUU--CCGUAAUUAUGA---AUAAUUAAGGAAAA----- ...............((((((--...((((((-..((....))..))))))...)))))-).....---------.....((((--((.((((((...---.)))))).))))))----- ( -21.80, z-score = -3.45, R) >consensus CAACAAAUUAUCCUCGAGUUU__CCAGCGUGG_UUAGCACUUUAGCCACGUCAUAAAUU_CUCCUU_________ACAAGUUUU__CCGUAAUUAUGA___AUAAUUAGGAAAAA_____ ..........(((..(((........((((((.((((....)))))))))).........)))..........................(((((((.....))))))))))......... ( -8.61 = -9.21 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:07 2011