| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,366,447 – 7,366,542 |
| Length | 95 |
| Max. P | 0.807530 |
| Location | 7,366,447 – 7,366,542 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.80 |
| Shannon entropy | 0.37359 |
| G+C content | 0.49120 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -20.19 |
| Energy contribution | -20.07 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7366447 95 + 23011544 AAGUGCAGCCUGCAAUUCGCUGGCGAUGCUGCUGCUCUUCUCGGCGUU-------------------GCCUUCGUCAUCCUUGUAGUUGCAACGUCAUAAUUGCAACGCAUAAU ..((((....(((((..((..((((((((((..........)))))))-------------------)))..))......)))))(((((((........)))))))))))... ( -30.60, z-score = -1.70, R) >droSim1.chr2L 7154697 95 + 22036055 AAGUGCAGCCUGCAAUUCGCUGGCGAUGCUGCUGCUCUUCUCGGCGUU-------------------GCCUUCGUCAUCCUUGUAGUUGCAACGUCAUAAUUGCAACGCAUAAU ..((((....(((((..((..((((((((((..........)))))))-------------------)))..))......)))))(((((((........)))))))))))... ( -30.60, z-score = -1.70, R) >droSec1.super_3 2881583 95 + 7220098 AAGUGCAGCCUGCAAUUCGCUGGCGAUGCUGCUGCUCUUCUCGGCGUU-------------------GCCUUCGUCAUCCUUGUAGUUGCAACGUCAUAAUUGCAACGCAUAAU ..((((....(((((..((..((((((((((..........)))))))-------------------)))..))......)))))(((((((........)))))))))))... ( -30.60, z-score = -1.70, R) >droYak2.chr2L 16786966 95 - 22324452 AAGUGCAGCCUGCAAUUCGCUGGCGAUGCUGCUGCUCUUCUCGGCGCU-------------------GGCUUCGUCAUCCUUGUAGUUGCAACGUCAUAAUUGCAACGCAUAAU ..((((....(((((...(.((((((.(((((.(((......))))).-------------------))).)))))).).)))))(((((((........)))))))))))... ( -30.30, z-score = -0.86, R) >droEre2.scaffold_4929 16281249 80 + 26641161 AAGUGCAGCCUGCAAUUCGCUGGCGAU---------------GUGGCU-------------------GCCUUCGCCAUCCUUGUAGUUGCAACGUCAUAAUUGCAACGCAUAAU ..((((....(((((((...(((((.(---------------(..(((-------------------((.............)))))..)).))))).)))))))..))))... ( -25.62, z-score = -1.21, R) >droAna3.scaffold_12916 15268720 114 + 16180835 AAGUGCAGCCUGCAAUUCGCUGGCGUUCUUGUUCUCCUUCUCGUGGCUCGUUUUUCCAGUAACUGUUGUUGUUGCCAUCCUUGUAGUUGCAACAUCAUAAUUGCAACGCAUAAU ..((((.(((.((.....)).)))..................(((((......(..(((...)))..).....))))).......(((((((........)))))))))))... ( -26.10, z-score = -0.99, R) >droPer1.super_1 8086695 74 - 10282868 AAGUGCAGCCUGCAAUUCGUUGGCA---------------------UC-------------------GUCAUCCACCUCCUUGUAGUUGCAACGUCAUAAUUGCAACGCAUAAU ..((((.(((.((.....)).))).---------------------..-------------------..................(((((((........)))))))))))... ( -18.70, z-score = -1.96, R) >consensus AAGUGCAGCCUGCAAUUCGCUGGCGAUGCUGCUGCUCUUCUCGGCGUU___________________GCCUUCGUCAUCCUUGUAGUUGCAACGUCAUAAUUGCAACGCAUAAU ..((((.(((.((.....)).))).............................................................(((((((........)))))))))))... (-20.19 = -20.07 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:29 2011