| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,566,853 – 9,566,955 |
| Length | 102 |
| Max. P | 0.589195 |
| Location | 9,566,853 – 9,566,955 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.73 |
| Shannon entropy | 0.27868 |
| G+C content | 0.45680 |
| Mean single sequence MFE | -32.01 |
| Consensus MFE | -22.36 |
| Energy contribution | -21.44 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9566853 102 - 27905053 -------UAGCCUUUGGCUAGCAUAAAUCAAAAACGGUUCGAUCUAUGGUUUUGAGUUAUUAAUUGAAGCUGCCAGAGUCAGGGGACUCUGGUUUCAGGGCCAGACCAG -------(((((...)))))...............(((..(..((..(((((..(........)..)))))(((((((((....)))))))))....))..)..))).. ( -31.80, z-score = -1.84, R) >droSim1.chr3R 15657614 100 + 27517382 -------UGGCCUUUGGCUAGCAUAAAUCAAAAACGGAUCGAUCCAUGGUUUUGGAUUAUUAAUUGAAGCUGCCAGAGCCAGGGGA--UUGGUUUCACAGCCAGGCCAG -------((((((..((((.........(......)(((((((((.(((((((((....((.....))....)))))))))..)))--))))))....)))))))))). ( -36.80, z-score = -3.01, R) >droSec1.super_0 8679579 100 + 21120651 -------UGGCCUUUGGCUAGCAUAAAUCAAAAACGGAUCGAUCCAUGGUUUUGGAUUAUUAAUUGAAGCUGCCAGAGCCAGGGGA--UUGGUUUCACAGCCAGGCCAG -------((((((..((((.........(......)(((((((((.(((((((((....((.....))....)))))))))..)))--))))))....)))))))))). ( -36.80, z-score = -3.01, R) >droYak2.chr3R 13875075 107 - 28832112 UGGCCAUUGGCCAUUGACUAGCAUAAAUCAAAAACGGAUCGAUGCCUGGUUUUGGGUUAUUAAUUGAAGCUGCCAGAGUCAGGGGA--UUGGUUUCUGAACCAGACCGG (((((...)))))((((((.((((..(((.......)))..))))(((((...(..(((.....)))..).))))))))))).((.--((((((....)))))).)).. ( -32.40, z-score = -1.15, R) >droEre2.scaffold_4770 5679579 101 + 17746568 -------UUGCUGUUGGGUAACAUAAAUCAAAAACGGAGUCAUCCAUGGUUUUGGGUUAUUAAUUGAUGCUGUCAGAGUCAUUGGG-AUUGGUUUCAGAGCCAGGCCAC -------.........(((................(((....))).((((((((((.......(..(((((.....)).)))..).-......)))))))))).))).. ( -22.24, z-score = 0.55, R) >consensus _______UGGCCUUUGGCUAGCAUAAAUCAAAAACGGAUCGAUCCAUGGUUUUGGGUUAUUAAUUGAAGCUGCCAGAGUCAGGGGA__UUGGUUUCAGAGCCAGGCCAG ..........(((((((((.((.............((......))..(((((..(........)..)))))))...)))))))))...((((((....))))))..... (-22.36 = -21.44 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:13:00 2011