| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,551,617 – 9,551,684 |
| Length | 67 |
| Max. P | 0.928072 |
| Location | 9,551,617 – 9,551,684 |
|---|---|
| Length | 67 |
| Sequences | 8 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 69.96 |
| Shannon entropy | 0.57689 |
| G+C content | 0.50223 |
| Mean single sequence MFE | -20.59 |
| Consensus MFE | -6.94 |
| Energy contribution | -6.92 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9551617 67 + 27905053 CACUUUUCGCUGCAGUUCAGUGGCCGUUG-CACUUGACAUA-UAGCCACUG-UCAAUGCGACUAAGAGUG (((((((.(.((((...(((((((..(((-(....).)).)-..)))))))-....)))).).))))))) ( -23.00, z-score = -2.57, R) >droWil1.scaffold_181130 11003970 68 + 16660200 CAUUAUUUGAUGCGGUUCAGUGGCCAAUG-CACUUGACACU-CUGCCACUGAUUGUUGCAACUGAAACUG ..........(((((.((((((((...((-(....).))..-..))))))))...))))).......... ( -16.70, z-score = -1.25, R) >dp4.chr2 10102065 51 + 30794189 CACUUUCGGAUGCGGUUCGGUGGCCUUUGGCUGCCAAUGCACUUGACACUG------------------- .....(((..((((....((..(((...)))..))..))))..))).....------------------- ( -15.90, z-score = -1.59, R) >droPer1.super_0 1443396 51 - 11822988 CACUUUCGGAUGCGGUUCGGUGGCCUUUGGCUGCCAAUGCACUUGACACUG------------------- .....(((..((((....((..(((...)))..))..))))..))).....------------------- ( -15.90, z-score = -1.59, R) >droEre2.scaffold_4770 5664248 67 - 17746568 CACUUUUCGCUGCAGUUCAGUGGCCGUUG-CACUUGACAUA-UAGCCACUG-UCAAUGCGACUAAAAGUG (((((((.(.((((...(((((((..(((-(....).)).)-..)))))))-....)))).).))))))) ( -22.90, z-score = -2.97, R) >droYak2.chr3R 13860049 64 + 28832112 CACUUUUCG---CAGUUCAGUGGCCGUUG-CACUUGACAUG-UAGCCACUG-UCAAUGCGACUAAAAGUG (((((((((---((...(((((((...((-((.......))-)))))))))-....)))))...)))))) ( -24.00, z-score = -3.49, R) >droSec1.super_0 8664597 67 - 21120651 CACUUUUCGCUGCAGUUCAGUGGCCGUUG-CACUUGACAUA-CAGUCACUG-UCAAUGCGACUAAAAGUG (((((((.((..(......)..)).((((-((.((((((..-.......))-)))))))))).))))))) ( -22.10, z-score = -2.41, R) >droSim1.chr3R 15632861 67 - 27517382 CACUUUUCGCUGCAGUUCAGUGGCCGUUG-CACUUGACAUA-CAGCCACUG-UCAAUGCGACUAAAAGUG (((((((.(.((((...(((((((.((((-(....).)).)-).)))))))-....)))).).))))))) ( -24.20, z-score = -3.15, R) >consensus CACUUUUCGCUGCAGUUCAGUGGCCGUUG_CACUUGACAUA_UAGCCACUG_UCAAUGCGACUAAAAGUG .................(((((((....................)))))))................... ( -6.94 = -6.92 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:56 2011