| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,548,272 – 9,548,374 |
| Length | 102 |
| Max. P | 0.873385 |
| Location | 9,548,272 – 9,548,374 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.22 |
| Shannon entropy | 0.58750 |
| G+C content | 0.43950 |
| Mean single sequence MFE | -21.16 |
| Consensus MFE | -10.99 |
| Energy contribution | -10.73 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9548272 102 - 27905053 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUCAGGCCAAGCUUGGAUA-UUUUUUUCCGCUUUUAGCCCUAGUCUAGCCCCCUCCCUCCUUG--------------- .((.(((....(((((...((((....)))).))))).......(((.((((..(((..-......)))))))...)))...).)).))..............--------------- ( -17.80, z-score = -0.60, R) >droSim1.chr3R 15629557 104 + 27517382 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUCAGGCCAAGCUUGGAUU--UUUUUCCCGCUUCUAGCCCUAGUCUAGCCCCCUACCCCCCUUUCG------------ .((.(((....(((((...((((....)))).))))).......(((.((((..(((..--....))).))))...)))...).)).)).................------------ ( -18.60, z-score = -1.24, R) >droSec1.super_0 8661294 103 + 21120651 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUCAGGCCAAGCUUGGAUU--UUUUUUCCGCUUUUAGCCCUAGUCUAGCCCCCUUCCCCCCCUCG------------- .((.(((....(((((...((((....)))).))))).......(((.((((..(((..--.....)))))))...)))...).)).))................------------- ( -17.50, z-score = -0.79, R) >droYak2.chr3R 13856678 96 - 28832112 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUCAGGCCAAGCUUGGAUA--UUUUUUCCGCUCUUAGCCCUAGUCUAGGCCCCCCUCA-------------------- ...........(((((...((((....)))).))))).......((((.((((.(((..--.....)))((.....))...)).)).)))).......-------------------- ( -18.40, z-score = -0.09, R) >droEre2.scaffold_4770 5660527 96 + 17746568 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUCAGGCCAAGCUUGGAUA--UUUUUUCCGCUUUUAGCCCUAGUCUAGGCCCCCCUCA-------------------- ...((((....(((((...((((....)))).)))))...(((((((...)))))))..--........))))...(((........)))........-------------------- ( -18.70, z-score = -0.23, R) >droAna3.scaffold_13340 13212719 99 + 23697760 CGCAAGUAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUCAGGCCAAGCAUGGAU---UUUUUUCAAGCCCUAUUCUGACCCUACCCCCCAACCCGGAG---------------- .....(((...(((((...((((....)))).)))))....(((((....((.((((.---....)))).)).....)))))...)))...((.....))..---------------- ( -14.60, z-score = 0.31, R) >dp4.chr2 10098843 113 - 30794189 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUUAGGCCAAGCUUGGA-----UUUGUUUUUUUUUUGUCCAAGCCCUACCCGGCCGGCCCCCCCGUUCUGCUCCGCGU (((.((((((((((((...((((....)))).))))).......((((..(((((((-----(..(.......)..))))))))((.....))..)))).....))).))))..))). ( -34.30, z-score = -3.18, R) >droPer1.super_0 1440213 117 + 11822988 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUUAGGCCAAGCUUGGAUUUUUUUUUUUUUUUUUUUGUCCAAGCCCUACCCGGCCGG-CCCCCCGUUCUGCUCCGCGU (((.((((((((((((...((((....)))).))))).......((((..((((((((..................))))))))((.....))..))-))....))).))))..))). ( -33.87, z-score = -3.26, R) >droWil1.scaffold_181130 10999400 83 - 16660200 CGCAAGAAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUUAGGCCAAGCUCGGA-----UUUUUCAAG---CAGCGAGAAAAAAAUUA--------------------------- (((..(((((.(((((...((((....)))).))))).))))).......(((.(((-----...))).))---).)))............--------------------------- ( -15.30, z-score = -0.32, R) >droMoj3.scaffold_6540 22554612 78 + 34148556 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCAC-UUUUUAGGCCAAGCUUGGA-----UUUUUCGAG--CCCGCCUGUAUGA-------------------------------- ..((.((....(((((...((((....)))).)))))-.....((((...(((((((-----...))))))--)..)))))).)).-------------------------------- ( -19.30, z-score = -1.07, R) >droVir3.scaffold_12822 1515995 79 - 4096053 UGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCAC-UUUUUAGGCCAAGCUUGGA----UUUUUUCGAG--CCCGCCCGAAAGA-------------------------------- ...........(((((...((((....)))).)))))-((((..(((...(((((((----....))))))--)..)))..)))).-------------------------------- ( -20.90, z-score = -1.73, R) >droGri2.scaffold_14624 2562532 78 - 4233967 CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCAC-UUUUUGGGCCAAGCUUGGA-----UUUUUCAAG--CCCGCCCGAAAGA-------------------------------- ...........(((((...((((....)))).)))))-(((((((((...(((((((-----...))))))--)..))))))))).-------------------------------- ( -24.60, z-score = -2.69, R) >consensus CGCAAGCAAACGUGCUGUCAUUAAAUUUAAUAAGCACUUUUUCAGGCCAAGCUUGGAU___UUUUUUCCACUUUUAGCCCGAGUCUAGCCCCC_C_C_____________________ .((........(((((...((((....)))).)))))...(((((((...)))))))...................))........................................ (-10.99 = -10.73 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:55 2011