| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,515,748 – 9,515,846 |
| Length | 98 |
| Max. P | 0.694225 |
| Location | 9,515,748 – 9,515,846 |
|---|---|
| Length | 98 |
| Sequences | 14 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 82.43 |
| Shannon entropy | 0.40078 |
| G+C content | 0.37755 |
| Mean single sequence MFE | -22.85 |
| Consensus MFE | -14.68 |
| Energy contribution | -13.52 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.694225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9515748 98 + 27905053 CGAGGAUAUCCGCACUCUGUGCGUUUACUUCGUGGAGAACUUCAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAGACAUUUAAGUACUUGAAGAAUC (((((.((..(((((...)))))..))))))).......((((((((...((((((((...))))))))..)))..((......))...))))).... ( -24.40, z-score = -1.30, R) >droSim1.chr3R 15597407 98 - 27517382 CGAGGAUAUCCGCACUCUGUGCGUUUACUUCGUGGAGAACUUCAGCAAGAUAUUUGAUGAAAUCGAAUACGUUCAGACAUUUAAGUACUUGAAGAAUC (((((.((..(((((...)))))..)))))))........(((..((((.(((((((.....(((((....))).))...)))))))))))..))).. ( -20.80, z-score = -0.15, R) >droSec1.super_0 8629166 98 - 21120651 CGAGGAUAUCCGCACUCUGUGCGUUUACUUCGUGGAGAACUUCAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAGACAUUUAAGUACUUGAAGAAUC (((((.((..(((((...)))))..))))))).......((((((((...((((((((...))))))))..)))..((......))...))))).... ( -24.40, z-score = -1.30, R) >droYak2.chr3R 13824202 98 + 28832112 CGAGGAUAUCCGCACUCUGUGCGUUUACUUCGUGGAGAACUUCAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAGACAUUUAAGUACUUGAAGAAUC (((((.((..(((((...)))))..))))))).......((((((((...((((((((...))))))))..)))..((......))...))))).... ( -24.40, z-score = -1.30, R) >droEre2.scaffold_4770 5626964 98 - 17746568 CGAGGAUAUCCGCACUCUGUGCGUUUACUUCGUGGAGAACUUCAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAGACAUUUAAGUACUUGAAGAAUC (((((.((..(((((...)))))..))))))).......((((((((...((((((((...))))))))..)))..((......))...))))).... ( -24.40, z-score = -1.30, R) >droAna3.scaffold_13340 13170526 98 - 23697760 CGAGGACAUUCGCACCCUGUGCGUCUACUUUGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAGACAUUCAAGUACUUGAAGAACC ((((.((....((((...))))((((.(((....))).......(((..(((((((((...))))))))).)))))))......)).))))....... ( -22.40, z-score = -1.05, R) >dp4.chr2 10066450 98 + 30794189 CGAGGAUAUCCGCACAUUGUGCGUUUAUUUCGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAGACAUUCAAAUAUUUAAAGAAUC ((((.(((..(((((...)))))..)))))))....(((..((.(((..(((((((((...))))))))).))).))..)))................ ( -21.30, z-score = -1.24, R) >droPer1.super_0 1407886 98 - 11822988 CGAGGAUAUCCGCACAUUGUGCGUUUAUUUCGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAGACAUUCAAAUAUUUAAAGAAUC ((((.(((..(((((...)))))..)))))))....(((..((.(((..(((((((((...))))))))).))).))..)))................ ( -21.30, z-score = -1.24, R) >droWil1.scaffold_181130 10964134 98 + 16660200 CGAAGAUAUACGCACAUUGUGCGUGUAUUUUGUAGAGAAUUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAGACAUUCAAAUAUUUGAAGAAUC ..(((((((((((((...))))))))))))).....((((.((.(((..(((((((((...))))))))).))).)).))))................ ( -27.20, z-score = -3.79, R) >droVir3.scaffold_12822 1477077 98 + 4096053 CGAGGAUAUACGUACGCUGUGCGUAUACUUCGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAAACAUUUAAAUACCUAAAGAAUC (((((.(((((((((...)))))))))))))).......((((((....(((((((((...)))))))))((....))..........)))))).... ( -24.50, z-score = -2.91, R) >droMoj3.scaffold_6540 22519129 98 - 34148556 UGAAGAUAUACGCACGCUGUGCGUAUACUUCGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAAACAUUUAAAUACCUAAAGAAUC .((((.(((((((((...)))))))))))))........((((((.....((((((((...)))))))).((....))..........)))))).... ( -24.40, z-score = -3.12, R) >droGri2.scaffold_14624 2523042 98 + 4233967 CGAGGAUAUACGCACAUUGUGUGUAUACUUUGUGGAAAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAAACAUUUAAAUACCUAAAGAACC (((((.(((((((((...)))))))))))))).......((((((....(((((((((...)))))))))((....))..........)))))).... ( -22.50, z-score = -3.08, R) >anoGam1.chr2R 23601972 98 - 62725911 GGAAGACAUCAAAUCGUUGUUAACGUAUUUCGUGGAAAGUUUCGGAAAGUUCUUCGAUGAUGUACAAUACGUCCAGACGUUCAAGACACUGAAGAGCA .((((.(((.(((((((.....))).)))).))).....)))).....((((((((....(((.....((((....)))).....))).)))))))). ( -19.80, z-score = 0.70, R) >triCas2.ChLG7 10205216 98 - 17478683 UGAGGAUAUAAAAACUUUGUGCUCGCACGUCGUCGAGAAUUACGGAAAAUGUUUAGAUAAUAUUUGUUACGUGCAAACGUUCAAAGCGCUGAAAACGA .(((.(((.........))).)))(((((((((........)))..(((((((.....)))))))...))))))...((((((......)))..))). ( -18.10, z-score = 0.89, R) >consensus CGAGGAUAUCCGCACUCUGUGCGUUUACUUCGUGGAGAACUUCAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAGACAUUUAAAUACUUGAAGAAUC (((((.((..(((((...)))))..))))))).......((((((.....((((((((...)))))))).((....))..........)))))).... (-14.68 = -13.52 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:52 2011