| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,510,918 – 9,510,982 |
| Length | 64 |
| Max. P | 0.500000 |
| Location | 9,510,918 – 9,510,982 |
|---|---|
| Length | 64 |
| Sequences | 9 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 90.54 |
| Shannon entropy | 0.19171 |
| G+C content | 0.49047 |
| Mean single sequence MFE | -21.71 |
| Consensus MFE | -19.57 |
| Energy contribution | -19.58 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 9510918 64 - 27905053 ACGAUU-GCGAACGCGUCGUAUCUUGUUUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGC ......-.....((((.(((((.......(((((((((((....)))))))))))))))))))). ( -22.21, z-score = -1.07, R) >droEre2.scaffold_4770 5622080 63 + 17746568 ACGAUU-GCGAACGCGUCGUAUCUUC-UUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGC ......-.....((((.(((((....-..(((((((((((....)))))))))))))))))))). ( -22.40, z-score = -1.57, R) >droYak2.chr3R 13819323 63 - 28832112 ACGAGU-GCGAACGCGUCGUAUCUUG-UUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGC ......-.....((((.(((((....-..(((((((((((....)))))))))))))))))))). ( -22.40, z-score = -0.72, R) >droSec1.super_0 8624435 63 + 21120651 ACGAUU-GCGAACGCGUUGUAUCUUG-UUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGC ......-(((..(((((.........-.((((((((((((....)))))))))))).)))))))) ( -20.80, z-score = -0.72, R) >droSim1.chr3R 15592645 63 + 27517382 ACGAUU-GCGAACGCGUUGUAUCUUG-UUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGC ......-(((..(((((.........-.((((((((((((....)))))))))))).)))))))) ( -20.80, z-score = -0.72, R) >dp4.chr2 10062384 63 - 30794189 GCAGUU-ACGAGCGCGUCGUAUCUUG-UUUUUGCAUGCAUGGCAAUGUGUGCAGAAUACGCGCGC ......-....(((((.(((((....-..(((((((((((....))))))))))))))))))))) ( -25.10, z-score = -1.50, R) >droPer1.super_0 1403821 62 + 11822988 GCAGUU-ACGAGCGCGUCGUAUCUUG--UUUUGCAUGCAUGGCAAUGUGUGCAGAAUACGCGCGC ......-....(((((.(((((....--.(((((((((((....))))))))))))))))))))) ( -25.50, z-score = -1.61, R) >droAna3.scaffold_13340 13166177 62 + 23697760 ACGAUU-ACGAACGCGUCGUAUCUUG--UUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGC ......-.....((((.(((((....--.(((((((((((....)))))))))))))))))))). ( -22.80, z-score = -1.77, R) >droWil1.scaffold_181130 10959226 64 - 16660200 ACGAUUGGCAAACUCGUCGUAUCUUG-UUUUUGCAUGCAUGGCAAUGUAUACAGAGAAUACGCGC (((((.((....)).)))))......-((((((.((((((....)))))).))))))........ ( -13.40, z-score = 0.37, R) >consensus ACGAUU_GCGAACGCGUCGUAUCUUG_UUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGC ............((((.(((((.......(((((((((((....)))))))))))))))))))). (-19.57 = -19.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:51 2011