| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,356,439 – 7,356,535 |
| Length | 96 |
| Max. P | 0.939394 |
| Location | 7,356,439 – 7,356,535 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 84.78 |
| Shannon entropy | 0.28901 |
| G+C content | 0.45743 |
| Mean single sequence MFE | -31.43 |
| Consensus MFE | -21.25 |
| Energy contribution | -22.50 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7356439 96 + 23011544 AUGUCUAAAUAAUGCAACACCAAAGUUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUUGU---GGCCGUUUUCUGGGCUCAA-CACCACAAAGGACUA ..(((...................((((.(((....)))))))((((((((((((((.....---))))(((.....)))....-))))))))))))).. ( -35.30, z-score = -2.73, R) >droAna3.scaffold_12916 15258627 86 + 16180835 AUGUCUAAAUAAUGCAACACCAAAGCG-------UUG--CGCCUUUUGUGGUGGUUUAUUGU---GGCUGGACUUUUAACUCUG--GCCACAAAGGACUA .............(((((........)-------)))--)(((......)))((((..((((---(((..((........))..--)))))))..)))). ( -29.30, z-score = -3.12, R) >droEre2.scaffold_4929 16270971 94 + 26641161 AUGUCUAAAUAAUGCAACACCAAAGCUGAACCUUUUG-CCAACCUUUGUGGUGGCCUAUUGU---GGCCGCUUUCUG-GCUCAA-CGCCACAAAGGACUA .............((((.....(((......))))))-)...((((((((((((((......---))))(((....)-))....-.)))))))))).... ( -27.90, z-score = -2.12, R) >droYak2.chr2L 16775799 100 - 22324452 AUGUCUAAAUAAUGCAACACCAAAGUUGAACCUUCUGGCCAACCUUUGUGUUGGGCUAUUGUUGUGGCCGUUUUCUGUGCCCAAACUCCACAAAGGACUA ..............((((((.((.((((..((....)).)))).)).))))))((((((....))))))(((((.((((.........)))).))))).. ( -25.50, z-score = -0.97, R) >droSec1.super_3 2871447 96 + 7220098 AUGUCUAAAUAAUGCAACACCAAAGUUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUUGU---GGCCGUUUUCAGGGCUCAA-CACCACAAAGGACUA ..(((...................((((.(((....)))))))((((((((((((((.....---))))(((.....)))....-))))))))))))).. ( -35.30, z-score = -2.67, R) >droSim1.chr2L 7144502 96 + 22036055 AUGUCUAAAUAAUGCAACACCAAAGUUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUUGU---GGCCGUUUUCUGGGCUCAA-CACCACAAAGGACUA ..(((...................((((.(((....)))))))((((((((((((((.....---))))(((.....)))....-))))))))))))).. ( -35.30, z-score = -2.73, R) >consensus AUGUCUAAAUAAUGCAACACCAAAGUUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUUGU___GGCCGUUUUCUGGGCUCAA_CACCACAAAGGACUA .((.(((((.....((((......)))).....))))).)).(((((((((((((((........))))((.......)).....))))))))))).... (-21.25 = -22.50 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:28 2011